Variant report

Variant	rs74018288
Chromosome Location	chr16:48181001-48181002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16945864	0.98[AFR][1000 genomes]
rs16945867	0.98[AFR][1000 genomes]
rs16945872	0.98[AFR][1000 genomes]
rs16945876	0.98[AFR][1000 genomes]
rs16945878	0.98[AFR][1000 genomes]
rs16945880	0.97[AFR][1000 genomes]
rs16945881	0.98[AFR][1000 genomes]
rs16945883	0.98[AFR][1000 genomes]
rs16945890	0.98[AFR][1000 genomes]
rs16945892	0.98[AFR][1000 genomes]
rs16945895	0.98[AFR][1000 genomes]
rs16945897	0.98[AFR][1000 genomes]
rs16945901	0.98[AFR][1000 genomes]
rs16945903	0.98[AFR][1000 genomes]
rs16945904	0.97[AFR][1000 genomes]
rs17815694	0.98[AFR][1000 genomes]
rs55913020	0.95[AFR][1000 genomes]
rs58041814	0.98[AFR][1000 genomes]
rs59404336	0.98[AFR][1000 genomes]
rs59546442	0.98[AFR][1000 genomes]
rs60438421	0.98[AFR][1000 genomes]
rs60752576	0.98[AFR][1000 genomes]
rs61695297	0.98[AFR][1000 genomes]
rs7197710	0.98[AFR][1000 genomes]
rs74018257	0.94[AFR][1000 genomes]
rs74018258	0.98[AFR][1000 genomes]
rs74018260	0.98[AFR][1000 genomes]
rs74018262	0.98[AFR][1000 genomes]
rs74018265	0.98[AFR][1000 genomes]
rs74018274	0.98[AFR][1000 genomes]
rs74018275	0.98[AFR][1000 genomes]
rs74018276	0.98[AFR][1000 genomes]
rs74018277	0.98[AFR][1000 genomes]
rs74018278	0.98[AFR][1000 genomes]
rs74018285	0.98[AFR][1000 genomes]
rs74018286	0.98[AFR][1000 genomes]
rs74018287	0.98[AFR][1000 genomes]
rs74018289	0.98[AFR][1000 genomes]
rs74018292	0.98[AFR][1000 genomes]
rs74018293	0.98[AFR][1000 genomes]
rs74018294	0.98[AFR][1000 genomes]
rs74018296	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48168200-48188800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:48172000-48186600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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