Variant report

Variant	rs74018294
Chromosome Location	chr16:48181754-48181755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:48181753-48181803	HRE	kidney:	n/a
2	chr16:48181753-48181803	RPTEC	kidney:	n/a
3	chr16:48181753-48181803	HCT-116	colon:	n/a
4	chr16:48181753-48181803	GM12878	blood:	n/a
5	chr16:48181753-48181803	NB4	blood:	n/a
6	chr16:48181753-48181803	NH-A	brain:	n/a
7	chr16:48181753-48181803	IMR90	lung:	fetal
8	chr16:48181753-48181803	T-47D	breast:	n/a
9	chr16:48181753-48181803	MCF-7	breast:	n/a
10	chr16:48181753-48181803	Caco-2	colon:	n/a
11	chr16:48181753-48181803	BJ	skin:	n/a
12	chr16:48181753-48181803	Hela-S3	cervix:	n/a
13	chr16:48181753-48181803	HCF	heart:	n/a
14	chr16:48181753-48181803	HEK293	kidney:	embryo
15	chr16:48181753-48181803	AG04450	lung:	fetal
16	chr16:48181753-48181803	HMEC	breast:	n/a
17	chr16:48181753-48181803	HEEpiC	esophagus:	n/a
18	chr16:48181753-48181803	HUVEC	blood vessel:	n/a
19	chr16:48181753-48181803	Hepatocyte	liver:	n/a
20	chr16:48181753-48181803	AG09319	gingival:	n/a
21	chr16:48181753-48181803	HCM	heart:	n/a
22	chr16:48181753-48181803	AG09309	skin:	n/a
23	chr16:48181753-48181803	HepG2	liver:	n/a
24	chr16:48181753-48181803	H1-hESC	embryonic stem cell:	embryo
25	chr16:48181753-48181803	HIPEpiC	eye:	n/a
26	chr16:48181753-48181803	GM06990	blood:	n/a
27	chr16:48181753-48181803	HPAEpiC	pulmonary alveolar:	n/a
28	chr16:48181753-48181803	PrEC	prostate:	n/a
29	chr16:48181753-48181803	GM12892	blood:	n/a
30	chr16:48181753-48181803	GM19239	blood:	n/a
31	chr16:48181753-48181803	HL-60	blood:	n/a
32	chr16:48181753-48181803	SK-N-SH_RA	brain:	n/a
33	chr16:48181753-48181803	LNCaP	prostate:	n/a
34	chr16:48181753-48181803	SKMC	muscle:	n/a
35	chr16:48181753-48181803	HRPEpiC	eye:	n/a
36	chr16:48181753-48181803	PFSK-1	brain:	n/a
37	chr16:48181753-48181803	SK-N-MC	brain:	n/a
38	chr16:48181753-48181803	MCF10A-Er-Src	breast:	n/a
39	chr16:48181753-48181803	K562	blood:	n/a
40	chr16:48181753-48181803	GM12891	blood:	n/a
41	chr16:48181753-48181803	AG10803	skin:	n/a
42	chr16:48181753-48181803	AoSMC	blood vessel:	n/a
43	chr16:48181753-48181803	HNPCEpiC	eye:	n/a
44	chr16:48181753-48181803	NT2-D1	testis:	n/a
45	chr16:48181753-48181803	Jurkat	blood:	n/a
46	chr16:48181753-48181803	BE2_C	brain:	n/a
47	chr16:48181753-48181803	SAEC	small airway:	n/a
48	chr16:48181753-48181803	SK-N-SH	brain:	n/a
49	chr16:48181753-48181803	ovcar-3	ovarian:	n/a
50	chr16:48181753-48181803	PANC-1	pancreas:	n/a

No data

Variant related genes	Relation type
ABCC12	CpG island

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs16945857	1.00[AMR][1000 genomes]
rs16945864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945904	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945922	1.00[AMR][1000 genomes]
rs16945926	1.00[AMR][1000 genomes]
rs16945943	1.00[AMR][1000 genomes]
rs16945946	1.00[AMR][1000 genomes]
rs17815694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55913020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58041814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59000493	1.00[AMR][1000 genomes]
rs59404336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59546442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59815620	1.00[AMR][1000 genomes]
rs60438421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60752576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61695297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7184973	1.00[AMR][1000 genomes]
rs7187621	1.00[AMR][1000 genomes]
rs7197710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7204946	1.00[AMR][1000 genomes]
rs74018257	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018281	1.00[AMR][1000 genomes]
rs74018285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018288	0.98[AFR][1000 genomes]
rs74018289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48168200-48188800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:48172000-48186600	Weak transcription	Fetal Brain Male	brain

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