Variant report

Variant	rs16945946
Chromosome Location	chr16:48242359-48242360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:48238882..48241120-chr16:48241985..48244745,3	K562	blood:
2	chr16:48240601..48242783-chr16:48255391..48257928,2	K562	blood:
3	chr16:48242035..48245546-chr16:48247049..48249278,4	K562	blood:

Variant related genes	Relation type
ENSG00000121270	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs16945857	1.00[AMR][1000 genomes]
rs16945864	1.00[AMR][1000 genomes]
rs16945867	1.00[AMR][1000 genomes]
rs16945872	1.00[AMR][1000 genomes]
rs16945876	1.00[AMR][1000 genomes]
rs16945878	1.00[AMR][1000 genomes]
rs16945880	1.00[AMR][1000 genomes]
rs16945881	1.00[AMR][1000 genomes]
rs16945883	1.00[AMR][1000 genomes]
rs16945890	1.00[AMR][1000 genomes]
rs16945892	1.00[AMR][1000 genomes]
rs16945895	1.00[AMR][1000 genomes]
rs16945897	1.00[AMR][1000 genomes]
rs16945901	1.00[AMR][1000 genomes]
rs16945903	1.00[AMR][1000 genomes]
rs16945904	1.00[AMR][1000 genomes]
rs16945922	1.00[AMR][1000 genomes]
rs16945926	1.00[AMR][1000 genomes]
rs16945943	1.00[AMR][1000 genomes]
rs16946016	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16946018	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16946020	0.85[AFR][1000 genomes]
rs16946022	0.85[AFR][1000 genomes]
rs16946024	0.85[AFR][1000 genomes]
rs16946028	0.85[AFR][1000 genomes]
rs16946031	0.85[AFR][1000 genomes]
rs16946033	0.85[AFR][1000 genomes]
rs16946106	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs16946120	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs17815694	1.00[AMR][1000 genomes]
rs2160564	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2353650	1.00[ASW][hapmap];0.91[LWK][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs34437640	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap]
rs35730749	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs55913020	1.00[AMR][1000 genomes]
rs55939380	0.85[AFR][1000 genomes]
rs56006148	0.85[AFR][1000 genomes]
rs56039807	0.85[AFR][1000 genomes]
rs56068904	0.85[AFR][1000 genomes]
rs56210528	0.85[AFR][1000 genomes]
rs56252717	0.81[AFR][1000 genomes]
rs57045758	0.85[AFR][1000 genomes]
rs57646139	0.81[AFR][1000 genomes]
rs57858756	0.81[AFR][1000 genomes]
rs58041814	1.00[AMR][1000 genomes]
rs58068024	0.85[AFR][1000 genomes]
rs58095119	0.81[AFR][1000 genomes]
rs58315149	0.85[AFR][1000 genomes]
rs58405777	0.85[AFR][1000 genomes]
rs58531648	0.81[AFR][1000 genomes]
rs58952249	0.85[AFR][1000 genomes]
rs59000493	1.00[AMR][1000 genomes]
rs59077393	0.85[AFR][1000 genomes]
rs59174783	0.81[AFR][1000 genomes]
rs59295735	0.85[AFR][1000 genomes]
rs59382226	0.85[AFR][1000 genomes]
rs59404336	1.00[AMR][1000 genomes]
rs59546442	1.00[AMR][1000 genomes]
rs59815620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60438421	1.00[AMR][1000 genomes]
rs60752576	1.00[AMR][1000 genomes]
rs60791230	0.85[AFR][1000 genomes]
rs61055548	0.85[AFR][1000 genomes]
rs61695297	1.00[AMR][1000 genomes]
rs7184973	1.00[AMR][1000 genomes]
rs7187621	1.00[AMR][1000 genomes]
rs7197710	1.00[AMR][1000 genomes]
rs7204946	1.00[AMR][1000 genomes]
rs74016323	0.85[AFR][1000 genomes]
rs74016324	0.85[AFR][1000 genomes]
rs74016326	0.85[AFR][1000 genomes]
rs74016331	0.85[AFR][1000 genomes]
rs74016334	0.85[AFR][1000 genomes]
rs74016335	0.85[AFR][1000 genomes]
rs74016337	0.85[AFR][1000 genomes]
rs74016338	0.85[AFR][1000 genomes]
rs74016339	0.85[AFR][1000 genomes]
rs74016340	0.85[AFR][1000 genomes]
rs74016341	0.85[AFR][1000 genomes]
rs74016342	0.85[AFR][1000 genomes]
rs74016343	0.85[AFR][1000 genomes]
rs74016344	0.85[AFR][1000 genomes]
rs74016345	0.85[AFR][1000 genomes]
rs74016346	0.85[AFR][1000 genomes]
rs74016347	0.85[AFR][1000 genomes]
rs74016348	0.85[AFR][1000 genomes]
rs74016349	0.85[AFR][1000 genomes]
rs74016350	0.85[AFR][1000 genomes]
rs74016351	0.85[AFR][1000 genomes]
rs74016352	0.82[AFR][1000 genomes]
rs74016353	0.85[AFR][1000 genomes]
rs74016355	0.85[AFR][1000 genomes]
rs74016357	0.85[AFR][1000 genomes]
rs74016358	0.85[AFR][1000 genomes]
rs74018257	1.00[AMR][1000 genomes]
rs74018258	1.00[AMR][1000 genomes]
rs74018260	1.00[AMR][1000 genomes]
rs74018262	1.00[AMR][1000 genomes]
rs74018265	1.00[AMR][1000 genomes]
rs74018274	1.00[AMR][1000 genomes]
rs74018275	1.00[AMR][1000 genomes]
rs74018276	1.00[AMR][1000 genomes]
rs74018277	1.00[AMR][1000 genomes]
rs74018278	1.00[AMR][1000 genomes]
rs74018281	1.00[AMR][1000 genomes]
rs74018285	1.00[AMR][1000 genomes]
rs74018286	1.00[AMR][1000 genomes]
rs74018287	1.00[AMR][1000 genomes]
rs74018289	1.00[AMR][1000 genomes]
rs74018292	1.00[AMR][1000 genomes]
rs74018293	1.00[AMR][1000 genomes]
rs74018294	1.00[AMR][1000 genomes]
rs74018296	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48239400-48245800	Weak transcription	Right Atrium	heart
2	chr16:48239600-48250000	Weak transcription	Pancreas	Pancrea
3	chr16:48241000-48245800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:48241200-48243400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr16:48241200-48244000	Weak transcription	Liver	Liver
6	chr16:48241200-48244400	Weak transcription	HMEC	breast
7	chr16:48241400-48243800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr16:48241600-48244400	Weak transcription	HepG2	liver
9	chr16:48241800-48242600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr16:48241800-48244400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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