Variant report

Variant	rs16945890
Chromosome Location	chr16:48178576-48178577
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs16945857	1.00[AMR][1000 genomes]
rs16945864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945904	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945922	1.00[AMR][1000 genomes]
rs16945926	1.00[AMR][1000 genomes]
rs16945943	1.00[AMR][1000 genomes]
rs16945946	1.00[AMR][1000 genomes]
rs17815694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55913020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58041814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59000493	1.00[AMR][1000 genomes]
rs59404336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59546442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59815620	1.00[AMR][1000 genomes]
rs60438421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60752576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61695297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7184973	1.00[AMR][1000 genomes]
rs7187621	1.00[AMR][1000 genomes]
rs7197710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7204946	1.00[AMR][1000 genomes]
rs74018257	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018281	1.00[AMR][1000 genomes]
rs74018285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018288	0.98[AFR][1000 genomes]
rs74018289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48168200-48188800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:48172000-48186600	Weak transcription	Fetal Brain Male	brain
3	chr16:48177600-48178800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:48177600-48179000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr16:48177800-48178600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr16:48177800-48178600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr16:48177800-48178600	Enhancers	Brain Germinal Matrix	brain
8	chr16:48177800-48178600	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links