Variant report

Variant	rs7184973
Chromosome Location	chr16:48163535-48163536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs16945857	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945864	1.00[AMR][1000 genomes]
rs16945867	1.00[AMR][1000 genomes]
rs16945872	1.00[AMR][1000 genomes]
rs16945876	1.00[AMR][1000 genomes]
rs16945878	1.00[AMR][1000 genomes]
rs16945880	1.00[AMR][1000 genomes]
rs16945881	1.00[AMR][1000 genomes]
rs16945883	1.00[AMR][1000 genomes]
rs16945890	1.00[AMR][1000 genomes]
rs16945892	1.00[AMR][1000 genomes]
rs16945895	1.00[AMR][1000 genomes]
rs16945897	1.00[AMR][1000 genomes]
rs16945901	1.00[AMR][1000 genomes]
rs16945903	1.00[AMR][1000 genomes]
rs16945904	1.00[AMR][1000 genomes]
rs16945922	1.00[AMR][1000 genomes]
rs16945926	1.00[AMR][1000 genomes]
rs16945943	1.00[AMR][1000 genomes]
rs16945946	1.00[AMR][1000 genomes]
rs17815694	1.00[AMR][1000 genomes]
rs55913020	1.00[AMR][1000 genomes]
rs58041814	1.00[AMR][1000 genomes]
rs59000493	1.00[AMR][1000 genomes]
rs59404336	1.00[AMR][1000 genomes]
rs59546442	1.00[AMR][1000 genomes]
rs59815620	1.00[AMR][1000 genomes]
rs60438421	1.00[AMR][1000 genomes]
rs60752576	1.00[AMR][1000 genomes]
rs61695297	1.00[AMR][1000 genomes]
rs7187621	1.00[AMR][1000 genomes]
rs7197710	1.00[AMR][1000 genomes]
rs7204946	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018257	1.00[AMR][1000 genomes]
rs74018258	1.00[AMR][1000 genomes]
rs74018260	1.00[AMR][1000 genomes]
rs74018262	1.00[AMR][1000 genomes]
rs74018265	1.00[AMR][1000 genomes]
rs74018274	1.00[AMR][1000 genomes]
rs74018275	1.00[AMR][1000 genomes]
rs74018276	1.00[AMR][1000 genomes]
rs74018277	1.00[AMR][1000 genomes]
rs74018278	1.00[AMR][1000 genomes]
rs74018281	1.00[AMR][1000 genomes]
rs74018285	1.00[AMR][1000 genomes]
rs74018286	1.00[AMR][1000 genomes]
rs74018287	1.00[AMR][1000 genomes]
rs74018289	1.00[AMR][1000 genomes]
rs74018292	1.00[AMR][1000 genomes]
rs74018293	1.00[AMR][1000 genomes]
rs74018294	1.00[AMR][1000 genomes]
rs74018296	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48159000-48164000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr16:48159800-48164000	Enhancers	Osteobl	bone
3	chr16:48160600-48163600	Enhancers	Pancreas	Pancrea
4	chr16:48160800-48166200	Weak transcription	Fetal Lung	lung
5	chr16:48161600-48163600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr16:48161600-48163800	Enhancers	A549	lung
7	chr16:48161600-48170400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:48161800-48167800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr16:48162600-48170400	Weak transcription	Fetal Muscle Leg	muscle
10	chr16:48162800-48163600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr16:48162800-48164000	Enhancers	Right Ventricle	heart
12	chr16:48162800-48164000	Bivalent Enhancer	HepG2	liver
13	chr16:48163200-48166000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr16:48163200-48169800	Weak transcription	Left Ventricle	heart
15	chr16:48163400-48165200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr16:48163400-48167800	Weak transcription	Gastric	stomach
17	chr16:48163400-48170800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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