Variant report

Variant	rs74023496
Chromosome Location	chr15:74675869-74675870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74674450..74677326-chr15:74734711..74737166,2	K562	blood:
2	chr15:74674587..74678748-chr15:74711681..74714409,4	K562	blood:
3	chr15:74674020..74678319-chr15:74686843..74691927,9	MCF-7	breast:
4	chr15:74674464..74676732-chr15:74730523..74731726,34	MCF-7	breast:
5	chr15:74675537..74677180-chr15:74730758..74731693,9	MCF-7	breast:
6	chr15:74675197..74678908-chr15:74679707..74682707,4	K562	blood:
7	chr15:74673950..74692681-chr15:74720825..74732493,46	MCF-7	breast:
8	chr15:74675668..74677716-chr15:74696370..74698662,2	MCF-7	breast:
9	chr15:74673143..74676106-chr15:74720304..74723999,3	K562	blood:
10	chr15:74672262..74676345-chr15:74726156..74729235,5	K562	blood:
11	chr15:74673800..74676322-chr15:74808073..74810964,2	MCF-7	breast:
12	chr15:74675641..74677310-chr15:74711681..74714409,2	K562	blood:
13	chr15:74675629..74677365-chr15:75051109..75053785,2	K562	blood:
14	chr15:74671949..74676409-chr15:74729449..74732504,7	MCF-7	breast:
15	chr15:74674873..74676456-chr15:74837336..74838869,2	MCF-7	breast:
16	chr15:74674842..74675930-chr15:74728688..74730278,5	K562	blood:
17	chr15:74675805..74678192-chr15:74715315..74717229,2	MCF-7	breast:
18	chr15:74674023..74678158-chr15:74678990..74681883,4	MCF-7	breast:
19	chr15:74675588..74678002-chr15:74678167..74680672,2	K562	blood:
20	chr15:74674826..74677485-chr15:74730941..74732825,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28362929	0.82[AFR][1000 genomes]
rs3809542	0.92[AFR][1000 genomes]
rs41553712	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56308802	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59984854	0.86[AFR][1000 genomes]
rs60226645	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60852398	0.84[AFR][1000 genomes]
rs7163952	0.89[AMR][1000 genomes]
rs74023491	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74023494	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74023499	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74667200-74676400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:74667400-74676800	Weak transcription	Colonic Mucosa	Colon
3	chr15:74667400-74691200	Enhancers	Placenta	Placenta
4	chr15:74667600-74676000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:74667600-74677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:74667600-74677600	Weak transcription	Right Atrium	heart
7	chr15:74667800-74676000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:74670800-74678600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:74671600-74676000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:74671800-74676000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:74671800-74676200	Weak transcription	HUVEC	blood vessel
12	chr15:74671800-74676600	Weak transcription	Lung	lung
13	chr15:74671800-74677600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:74672000-74678600	Weak transcription	Fetal Kidney	kidney
15	chr15:74672600-74685600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:74673000-74678800	Enhancers	Osteobl	bone
17	chr15:74673000-74685000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:74673000-74685600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr15:74673200-74676000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:74673600-74676400	Enhancers	NHEK	skin
21	chr15:74673600-74679600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:74673600-74679600	Enhancers	Fetal Thymus	thymus
23	chr15:74673800-74676600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr15:74673800-74679000	Enhancers	NH-A	brain
25	chr15:74673800-74680400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:74673800-74681000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:74673800-74681400	Enhancers	HMEC	breast
28	chr15:74674000-74676400	Enhancers	HSMM	muscle
29	chr15:74674000-74679800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:74674000-74682000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:74674400-74683000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:74674600-74677200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:74674600-74677200	Enhancers	Dnd41	blood
34	chr15:74674600-74678000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr15:74674600-74678200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:74674600-74678600	Enhancers	Stomach Mucosa	stomach
37	chr15:74674600-74678800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr15:74674600-74680200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:74674600-74681200	Enhancers	Primary B cells from peripheral blood	blood
40	chr15:74674600-74686200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:74674800-74676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:74674800-74676000	Enhancers	HepG2	liver
43	chr15:74674800-74676200	Weak transcription	Hela-S3	cervix
44	chr15:74674800-74676200	Weak transcription	NHLF	lung
45	chr15:74674800-74676400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr15:74674800-74676400	Weak transcription	Fetal Lung	lung
47	chr15:74674800-74677000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr15:74674800-74679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:74674800-74679600	Enhancers	Thymus	Thymus
50	chr15:74675000-74676600	Weak transcription	Brain Hippocampus Middle	brain

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