Variant report

Variant	rs74023494
Chromosome Location	chr15:74674961-74674962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74674521..74675300-chr15:74752987..74753645,2	MCF-7	breast:
2	chr15:74674223..74675499-chr15:74730656..74732013,12	MCF-7	breast:
3	chr15:74674450..74677326-chr15:74734711..74737166,2	K562	blood:
4	chr15:74674587..74678748-chr15:74711681..74714409,4	K562	blood:
5	chr15:74673381..74675077-chr15:74906458..74908240,2	K562	blood:
6	chr15:74674497..74675282-chr15:74913529..74914084,2	MCF-7	breast:
7	chr15:74674020..74678319-chr15:74686843..74691927,9	MCF-7	breast:
8	chr15:74674464..74676732-chr15:74730523..74731726,34	MCF-7	breast:
9	chr15:74673404..74675121-chr15:74912291..74914615,2	MCF-7	breast:
10	chr15:74673517..74675292-chr15:74780973..74783508,2	MCF-7	breast:
11	chr15:74672262..74675760-chr15:74725088..74728699,4	K562	blood:
12	chr15:74668788..74670486-chr15:74672737..74675181,2	K562	blood:
13	chr15:74674425..74675368-chr15:74781828..74782810,7	K562	blood:
14	chr15:74673950..74692681-chr15:74720825..74732493,46	MCF-7	breast:
15	chr15:74673143..74676106-chr15:74720304..74723999,3	K562	blood:
16	chr15:74672262..74676345-chr15:74726156..74729235,5	K562	blood:
17	chr15:74673800..74676322-chr15:74808073..74810964,2	MCF-7	breast:
18	chr15:74673128..74674996-chr15:74912155..74914459,2	MCF-7	breast:
19	chr15:74674258..74675602-chr15:74730524..74732381,33	K562	blood:
20	chr15:74665280..74666364-chr15:74674391..74675333,6	K562	blood:
21	chr15:74674438..74675464-chr15:74913382..74914105,3	K562	blood:
22	chr15:74673269..74675342-chr15:74751837..74754262,2	K562	blood:
23	chr15:74671949..74676409-chr15:74729449..74732504,7	MCF-7	breast:
24	chr15:74674873..74676456-chr15:74837336..74838869,2	MCF-7	breast:
25	chr15:74673484..74675593-chr15:74779013..74782079,4	MCF-7	breast:
26	chr15:74674842..74675930-chr15:74728688..74730278,5	K562	blood:
27	chr15:74674407..74675335-chr15:74906391..74907128,2	K562	blood:
28	chr15:74674023..74678158-chr15:74678990..74681883,4	MCF-7	breast:
29	chr15:74674778..74675397-chr15:74924008..74924955,2	K562	blood:
30	chr15:74674826..74677485-chr15:74730941..74732825,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260919	Chromatin interaction
ENSG00000261775	Chromatin interaction
ENSG00000260103	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000138629	Chromatin interaction
ENSG00000138623	Chromatin interaction
ENSG00000212279	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17515476	0.89[ASN][1000 genomes]
rs28362922	0.82[AFR][1000 genomes]
rs28362929	0.84[AFR][1000 genomes]
rs3809542	0.95[AFR][1000 genomes]
rs41553612	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41553712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41563614	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55766734	1.00[EUR][1000 genomes]
rs56308802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59984854	0.89[AFR][1000 genomes]
rs60226645	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60852398	0.86[AFR][1000 genomes]
rs7163952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7175214	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74023479	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74023491	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74023496	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74023499	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74667200-74676400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:74667400-74676800	Weak transcription	Colonic Mucosa	Colon
3	chr15:74667400-74691200	Enhancers	Placenta	Placenta
4	chr15:74667600-74675600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:74667600-74675800	Weak transcription	A549	lung
6	chr15:74667600-74676000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:74667600-74677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:74667600-74677600	Weak transcription	Right Atrium	heart
9	chr15:74667800-74675000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:74667800-74676000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:74668000-74675000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:74670800-74678600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:74671600-74675800	Weak transcription	Esophagus	oesophagus
14	chr15:74671600-74676000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:74671800-74675000	Weak transcription	Spleen	Spleen
16	chr15:74671800-74675200	Weak transcription	Primary T cells from cord blood	blood
17	chr15:74671800-74675200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:74671800-74675400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:74671800-74676000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:74671800-74676200	Weak transcription	HUVEC	blood vessel
21	chr15:74671800-74676600	Weak transcription	Lung	lung
22	chr15:74671800-74677600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:74672000-74678600	Weak transcription	Fetal Kidney	kidney
24	chr15:74672600-74685600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:74673000-74678800	Enhancers	Osteobl	bone
26	chr15:74673000-74685000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:74673000-74685600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr15:74673200-74676000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:74673600-74676400	Enhancers	NHEK	skin
30	chr15:74673600-74679600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:74673600-74679600	Enhancers	Fetal Thymus	thymus
32	chr15:74673800-74675400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:74673800-74676600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr15:74673800-74679000	Enhancers	NH-A	brain
35	chr15:74673800-74680400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:74673800-74681000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:74673800-74681400	Enhancers	HMEC	breast
38	chr15:74674000-74675000	Weak transcription	HSMMtube	muscle
39	chr15:74674000-74675200	Enhancers	GM12878-XiMat	blood
40	chr15:74674000-74675200	Enhancers	NHDF-Ad	bronchial
41	chr15:74674000-74675400	Enhancers	Fetal Muscle Leg	muscle
42	chr15:74674000-74676400	Enhancers	HSMM	muscle
43	chr15:74674000-74679800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr15:74674000-74682000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:74674400-74675400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:74674400-74683000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:74674600-74675000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
48	chr15:74674600-74675000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:74674600-74675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:74674600-74675200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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