Variant report

Variant	rs74023479
Chromosome Location	chr15:74638002-74638003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17515476	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3809542	0.80[ASN][1000 genomes]
rs41553612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41553712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41563614	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766734	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56308802	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60226645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74023491	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74023494	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
2	chr15:74622600-74638600	Weak transcription	Spleen	Spleen
3	chr15:74628000-74642200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:74634200-74638200	Genic enhancers	Placenta	Placenta
5	chr15:74637000-74638200	Enhancers	HUVEC	blood vessel
6	chr15:74637000-74638200	Enhancers	NH-A	brain
7	chr15:74637000-74638400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:74637600-74638200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:74638000-74638200	Enhancers	Hela-S3	cervix
10	chr15:74638000-74640000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:74638000-74642800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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