Variant report

Variant	rs55766734
Chromosome Location	chr15:74619383-74619384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74617190..74619532-chr15:74620304..74624205,4	K562	blood:
2	chr15:74614136..74616902-chr15:74617695..74620669,2	K562	blood:
3	chr15:74618878..74621837-chr15:74625148..74627418,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17515476	0.82[ASN][1000 genomes]
rs3809542	0.98[ASN][1000 genomes]
rs41553612	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41553712	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41563614	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56308802	1.00[EUR][1000 genomes]
rs60226645	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7163952	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7175214	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74023479	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74023491	1.00[EUR][1000 genomes]
rs74023494	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74604800-74623400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
3	chr15:74616800-74620400	Enhancers	Placenta	Placenta
4	chr15:74616800-74621200	Enhancers	Spleen	Spleen
5	chr15:74617000-74622000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74617400-74619600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:74617600-74621400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:74617800-74620200	Weak transcription	Fetal Thymus	thymus
9	chr15:74618400-74621000	Enhancers	Fetal Muscle Leg	muscle
10	chr15:74618600-74619800	Enhancers	Ovary	ovary
11	chr15:74618600-74620000	Enhancers	Fetal Muscle Trunk	muscle
12	chr15:74618800-74619400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:74618800-74619400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:74618800-74619600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:74618800-74619600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:74618800-74619600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
17	chr15:74618800-74621000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:74618800-74621000	Enhancers	Primary hematopoietic stem cells	blood
19	chr15:74618800-74621400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr15:74618800-74621400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr15:74619000-74619400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:74619000-74619400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:74619000-74619600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr15:74619000-74619600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:74619000-74619600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:74619000-74621400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:74619000-74621400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:74619200-74619400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:74619200-74619400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:74619200-74619400	Bivalent Enhancer	Fetal Stomach	stomach
31	chr15:74619200-74619600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr15:74619200-74619600	Enhancers	H9 Cell Line	embryonic stem cell
33	chr15:74619200-74620400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:74619200-74621200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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