Variant report

Variant	rs60226645
Chromosome Location	chr15:74659274-74659275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74656941..74659751-chr15:74906408..74907911,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17515476	1.00[ASN][1000 genomes]
rs3809542	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs41553612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41553712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41563614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766734	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56308802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59984854	0.84[AFR][1000 genomes]
rs60852398	0.81[AFR][1000 genomes]
rs7163952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74023479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74023491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74023494	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74023496	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74023499	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	esv18862	chr15:74642778-74659579	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74657600-74660200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
2	chr15:74658000-74659400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:74658200-74661400	Weak transcription	Fetal Heart	heart
4	chr15:74658400-74659600	Weak transcription	Spleen	Spleen
5	chr15:74658400-74660000	Active TSS	Placenta	Placenta
6	chr15:74658600-74659600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:74658600-74659600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:74658600-74659600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:74658600-74659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:74658600-74665800	Weak transcription	Pancreas	Pancrea
11	chr15:74658600-74666200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:74658800-74659600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:74658800-74659600	Weak transcription	HepG2	liver
14	chr15:74658800-74659800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:74658800-74660000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr15:74658800-74661400	Weak transcription	Osteobl	bone
17	chr15:74658800-74664000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:74658800-74665800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:74658800-74666000	Weak transcription	Esophagus	oesophagus
20	chr15:74658800-74666200	Weak transcription	Right Atrium	heart
21	chr15:74659000-74659400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:74659000-74659800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:74659000-74659800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:74659000-74660200	Flanking Active TSS	Hela-S3	cervix
25	chr15:74659000-74661400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:74659200-74659400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:74659200-74661600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:74659200-74662200	Enhancers	Ovary	ovary

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