Variant report

Variant	rs74023957
Chromosome Location	chr15:75447372-75447373
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75444598..75448715-chr15:75454020..75457057,3	MCF-7	breast:
2	chr15:75446676..75449374-chr15:75464982..75466501,2	MCF-7	breast:
3	chr15:75447167..75449723-chr15:75491839..75495172,3	MCF-7	breast:
4	chr15:75445458..75447560-chr15:75496674..75499292,2	K562	blood:
5	chr15:75441576..75444367-chr15:75445715..75448698,2	K562	blood:
6	chr15:75445200..75447397-chr15:75452292..75454264,2	K562	blood:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57565416	1.00[AMR][1000 genomes]
rs57985760	1.00[AMR][1000 genomes]
rs58235768	1.00[AMR][1000 genomes]
rs58858999	1.00[AMR][1000 genomes]
rs73436564	1.00[AMR][1000 genomes]
rs74023907	1.00[AMR][1000 genomes]
rs74023911	1.00[AMR][1000 genomes]
rs74023919	1.00[AMR][1000 genomes]
rs74023929	1.00[AMR][1000 genomes]
rs74023937	1.00[AMR][1000 genomes]
rs74023962	1.00[AMR][1000 genomes]
rs74025864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75438600-75448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:75443600-75448000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:75443600-75448400	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:75443800-75449400	Enhancers	Spleen	Spleen
5	chr15:75444000-75449000	Weak transcription	Lung	lung
6	chr15:75444200-75447800	Enhancers	HepG2	liver
7	chr15:75444600-75447800	Enhancers	Primary B cells from cord blood	blood
8	chr15:75444600-75448800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:75445000-75447400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr15:75445600-75448000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr15:75445800-75448600	Weak transcription	Hela-S3	cervix
12	chr15:75446000-75449600	Enhancers	GM12878-XiMat	blood
13	chr15:75446200-75447400	Enhancers	Liver	Liver
14	chr15:75446200-75449000	Weak transcription	A549	lung
15	chr15:75446400-75452000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr15:75446400-75453400	Weak transcription	Right Atrium	heart
17	chr15:75446600-75451200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:75446800-75451600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:75447000-75447400	Enhancers	Duodenum Mucosa	Duodenum
20	chr15:75447000-75447600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:75447000-75447600	Weak transcription	Fetal Thymus	thymus
22	chr15:75447000-75448600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:75447000-75449600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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