Variant report

Variant	rs74023962
Chromosome Location	chr15:75459343-75459344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57565416	1.00[AMR][1000 genomes]
rs57985760	1.00[AMR][1000 genomes]
rs58235768	1.00[AMR][1000 genomes]
rs58858999	1.00[AMR][1000 genomes]
rs73436564	1.00[AMR][1000 genomes]
rs74023907	1.00[AMR][1000 genomes]
rs74023911	1.00[AMR][1000 genomes]
rs74023919	1.00[AMR][1000 genomes]
rs74023929	1.00[AMR][1000 genomes]
rs74023937	1.00[AMR][1000 genomes]
rs74023957	1.00[AMR][1000 genomes]
rs74025864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75451400-75461800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:75454200-75470000	Weak transcription	Thymus	Thymus
3	chr15:75454600-75460000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:75455400-75463200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:75457200-75459400	Enhancers	HSMMtube	muscle
6	chr15:75457400-75459400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:75457400-75460000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:75457400-75460400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:75457400-75462800	Weak transcription	Lung	lung
10	chr15:75457600-75459600	Weak transcription	Hela-S3	cervix
11	chr15:75458400-75460000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:75458600-75459800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:75458800-75459400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:75458800-75459400	Enhancers	HepG2	liver
15	chr15:75458800-75459600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:75458800-75461200	Enhancers	K562	blood
17	chr15:75459200-75460800	Enhancers	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links