Variant report

Variant	rs74026083
Chromosome Location	chr16:70623887-70623888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:70618565..70621131-chr16:70622633..70625023,2	MCF-7	breast:
2	chr16:70608216..70610956-chr16:70621999..70624139,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260023	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16970320	0.92[ASN][1000 genomes]
rs2124833	0.92[ASN][1000 genomes]
rs28582709	0.81[ASN][1000 genomes]
rs3886749	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4082236	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56789504	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57136896	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59639975	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60432288	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60775369	0.84[ASN][1000 genomes]
rs61191728	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6499325	0.85[ASN][1000 genomes]
rs7192031	0.82[AMR][1000 genomes]
rs7196201	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7197333	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7199331	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74026082	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs74026085	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8049475	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8049598	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8061705	0.85[ASN][1000 genomes]
rs8062231	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8063029	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9924487	0.86[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70608000-70624600	Weak transcription	Pancreas	Pancrea
2	chr16:70609000-70628000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:70614000-70624200	Weak transcription	Gastric	stomach
4	chr16:70614200-70624000	Weak transcription	Aorta	Aorta
5	chr16:70616400-70624200	Weak transcription	Right Atrium	heart
6	chr16:70616800-70624000	Weak transcription	Ovary	ovary
7	chr16:70619000-70624400	Weak transcription	Fetal Thymus	thymus
8	chr16:70620800-70624000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr16:70621000-70624400	Weak transcription	Spleen	Spleen
10	chr16:70621600-70624000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr16:70622000-70626400	Enhancers	Fetal Stomach	stomach
12	chr16:70622400-70624000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr16:70622400-70624200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr16:70622400-70625000	Enhancers	HMEC	breast
15	chr16:70622600-70624000	Enhancers	Fetal Intestine Large	intestine
16	chr16:70622800-70624000	Weak transcription	Brain Hippocampus Middle	brain
17	chr16:70622800-70624000	Enhancers	Stomach Smooth Muscle	stomach
18	chr16:70622800-70624000	Weak transcription	NH-A	brain
19	chr16:70622800-70624200	Weak transcription	Liver	Liver
20	chr16:70622800-70624200	Weak transcription	Colon Smooth Muscle	Colon
21	chr16:70622800-70624600	Enhancers	Rectal Smooth Muscle	rectum
22	chr16:70623000-70624000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:70623600-70624000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr16:70623600-70624200	Enhancers	Fetal Muscle Trunk	muscle
25	chr16:70623800-70624000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr16:70623800-70624000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr16:70623800-70624000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr16:70623800-70624000	Flanking Active TSS	HSMMtube	muscle
29	chr16:70623800-70624200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr16:70623800-70624200	Enhancers	Adipose Nuclei	Adipose
31	chr16:70623800-70624200	Enhancers	Colonic Mucosa	Colon
32	chr16:70623800-70624200	Enhancers	Fetal Muscle Leg	muscle
33	chr16:70623800-70624400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr16:70623800-70624400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr16:70623800-70624400	Bivalent Enhancer	Stomach Mucosa	stomach
36	chr16:70623800-70624400	Flanking Bivalent TSS/Enh	HepG2	liver
37	chr16:70623800-70624400	Enhancers	NHDF-Ad	bronchial
38	chr16:70623800-70624400	Flanking Active TSS	NHEK	skin
39	chr16:70623800-70624600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr16:70623800-70624600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr16:70623800-70624600	Enhancers	Placenta	Placenta
42	chr16:70623800-70624600	Flanking Active TSS	A549	lung
43	chr16:70623800-70624800	Enhancers	Esophagus	oesophagus
44	chr16:70623800-70625000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr16:70623800-70625000	Flanking Active TSS	Fetal Intestine Small	intestine
46	chr16:70623800-70625000	Enhancers	Fetal Lung	lung
47	chr16:70623800-70625200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr16:70623800-70625200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr16:70623800-70625400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr16:70623800-70625400	Flanking Active TSS	Osteobl	bone

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