Variant report

Variant	rs74029404
Chromosome Location	chr15:78162993-78162994
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77925519..77926294-chr15:78162494..78163468,3	MCF-7	breast:
2	chr15:78162688..78164962-chr15:78166571..78168544,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4077809	1.00[AMR][1000 genomes]
rs4563012	1.00[AMR][1000 genomes]
rs55676203	1.00[AMR][1000 genomes]
rs55948223	1.00[AMR][1000 genomes]
rs56161805	1.00[AMR][1000 genomes]
rs74026822	1.00[AMR][1000 genomes]
rs74026824	1.00[AMR][1000 genomes]
rs74026893	1.00[AMR][1000 genomes]
rs74026895	1.00[AMR][1000 genomes]
rs74026896	1.00[AMR][1000 genomes]
rs74029437	1.00[AMR][1000 genomes]
rs74029441	1.00[AMR][1000 genomes]
rs8037835	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1046383	chr15:78153850-78229596	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904428	chr15:78156238-78230906	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78155800-78163000	Weak transcription	Fetal Intestine Small	intestine
2	chr15:78161200-78163000	Enhancers	Hela-S3	cervix
3	chr15:78161400-78163200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:78161400-78163200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:78161400-78163200	Enhancers	HSMM	muscle
6	chr15:78161400-78163400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:78162000-78163000	Weak transcription	Placenta	Placenta
8	chr15:78162200-78163400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr15:78162400-78163600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr15:78162400-78164800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:78162600-78163000	Enhancers	Fetal Kidney	kidney
12	chr15:78162600-78163000	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr15:78162600-78163200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:78162600-78164400	Bivalent Enhancer	Fetal Stomach	stomach
15	chr15:78162800-78163000	Enhancers	Brain Anterior Caudate	brain
16	chr15:78162800-78163200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr15:78162800-78163200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:78162800-78163200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:78162800-78163200	Enhancers	Pancreas	Pancrea
20	chr15:78162800-78163200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr15:78162800-78163400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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