Variant report

Variant	rs74029441
Chromosome Location	chr15:78177223-78177224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78170552..78173513-chr15:78177098..78179231,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4077809	1.00[AMR][1000 genomes]
rs4563012	1.00[AMR][1000 genomes]
rs55676203	1.00[AMR][1000 genomes]
rs55948223	1.00[AMR][1000 genomes]
rs56161805	1.00[AMR][1000 genomes]
rs74026822	1.00[AMR][1000 genomes]
rs74026824	1.00[AMR][1000 genomes]
rs74026893	1.00[AMR][1000 genomes]
rs74026895	1.00[AMR][1000 genomes]
rs74026896	1.00[AMR][1000 genomes]
rs74027743	1.00[AMR][1000 genomes]
rs74029404	1.00[AMR][1000 genomes]
rs74029437	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74029438	0.93[AFR][1000 genomes]
rs8037835	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1046383	chr15:78153850-78229596	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904428	chr15:78156238-78230906	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv3358231	chr15:78175897-78180095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78163200-78177400	Weak transcription	Esophagus	oesophagus
2	chr15:78164800-78177400	Weak transcription	Right Atrium	heart
3	chr15:78167600-78178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:78168200-78177400	Weak transcription	Right Ventricle	heart
5	chr15:78171800-78181400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:78172200-78179800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:78173200-78185600	Enhancers	Fetal Muscle Trunk	muscle
8	chr15:78173800-78186000	Enhancers	Fetal Muscle Leg	muscle
9	chr15:78175200-78177600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:78175200-78178000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:78176400-78181400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:78176800-78178200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr15:78176800-78178200	Enhancers	Adipose Nuclei	Adipose
14	chr15:78177000-78177400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:78177000-78177800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:78177000-78178200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:78177000-78178400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:78177000-78178600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:78177000-78178800	Enhancers	Fetal Stomach	stomach
20	chr15:78177200-78177400	Flanking Active TSS	Fetal Lung	lung
21	chr15:78177200-78177600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:78177200-78177600	Enhancers	Placenta	Placenta
23	chr15:78177200-78177800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:78177200-78177800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:78177200-78177800	Active TSS	Fetal Brain Male	brain
26	chr15:78177200-78177800	Enhancers	Fetal Kidney	kidney
27	chr15:78177200-78178000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr15:78177200-78178000	Enhancers	Spleen	Spleen
29	chr15:78177200-78178000	Enhancers	GM12878-XiMat	blood
30	chr15:78177200-78178200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:78177200-78178200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
32	chr15:78177200-78178200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:78177200-78178200	Enhancers	Osteobl	bone
34	chr15:78177200-78178400	Enhancers	NHDF-Ad	bronchial
35	chr15:78177200-78178600	Enhancers	Hela-S3	cervix
36	chr15:78177200-78178600	Enhancers	HSMMtube	muscle
37	chr15:78177200-78180200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links