Variant report

Variant	rs74037623
Chromosome Location	chr16:79808364-79808365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs61204574	0.83[AMR][1000 genomes]
rs74037480	0.83[AMR][1000 genomes]
rs74037484	0.83[AMR][1000 genomes]
rs74037487	0.83[AMR][1000 genomes]
rs74037488	0.83[AMR][1000 genomes]
rs74037494	0.83[AMR][1000 genomes]
rs74037611	0.83[AFR][1000 genomes]
rs74037612	0.83[AFR][1000 genomes]
rs74037622	0.86[AFR][1000 genomes]
rs74037627	1.00[AMR][1000 genomes]
rs74037857	0.83[AMR][1000 genomes]
rs74037858	0.83[AMR][1000 genomes]
rs74038035	0.83[AMR][1000 genomes]
rs74038038	0.83[AMR][1000 genomes]
rs74039243	0.83[AMR][1000 genomes]
rs74039244	0.83[AMR][1000 genomes]
rs74039247	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2755409	chr16:79776699-79816299	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79805000-79808800	Weak transcription	Esophagus	oesophagus
2	chr16:79805000-79809200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:79805000-79809400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:79805000-79810400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:79805200-79808600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:79805200-79809000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:79805200-79809000	Weak transcription	NHEK	skin
8	chr16:79805200-79809200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:79805200-79809200	Weak transcription	HMEC	breast
10	chr16:79805200-79810000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr16:79805200-79810200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr16:79805200-79810200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:79805200-79810200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr16:79805200-79810200	Weak transcription	Brain Hippocampus Middle	brain
15	chr16:79805200-79810200	Weak transcription	NH-A	brain
16	chr16:79805400-79809400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr16:79805400-79810200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr16:79805400-79810200	Weak transcription	Adipose Nuclei	Adipose
19	chr16:79805400-79810200	Weak transcription	Thymus	Thymus
20	chr16:79805400-79810400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr16:79805400-79810400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr16:79805600-79810400	Weak transcription	Colonic Mucosa	Colon
23	chr16:79806000-79810200	Weak transcription	Fetal Thymus	thymus
24	chr16:79806000-79810400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr16:79806200-79810200	Weak transcription	Fetal Kidney	kidney
26	chr16:79806200-79810400	Weak transcription	K562	blood
27	chr16:79806400-79810200	Weak transcription	Fetal Lung	lung
28	chr16:79806600-79809600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr16:79806600-79810200	Weak transcription	Fetal Muscle Leg	muscle
30	chr16:79806800-79810200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr16:79807000-79809200	Weak transcription	Small Intestine	intestine
32	chr16:79807000-79810200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr16:79807400-79810200	Weak transcription	Fetal Intestine Small	intestine
34	chr16:79807800-79810200	Weak transcription	Fetal Intestine Large	intestine
35	chr16:79808000-79810200	Weak transcription	Fetal Stomach	stomach
36	chr16:79808200-79810200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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