Variant report

Variant	rs74037857
Chromosome Location	chr16:79872034-79872035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
2	chr16:79870162..79872603-chr16:80005430..80007622,2	K562	blood:
3	chr16:79870617..79872194-chr16:79875627..79877913,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56127354	0.83[AMR][1000 genomes]
rs61204574	1.00[AMR][1000 genomes]
rs61614910	0.83[AMR][1000 genomes]
rs74037480	1.00[AMR][1000 genomes]
rs74037484	1.00[AMR][1000 genomes]
rs74037487	1.00[AMR][1000 genomes]
rs74037488	1.00[AMR][1000 genomes]
rs74037493	0.83[AMR][1000 genomes]
rs74037494	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74037623	0.83[AMR][1000 genomes]
rs74037627	0.83[AMR][1000 genomes]
rs74037858	1.00[AMR][1000 genomes]
rs74038035	1.00[AMR][1000 genomes]
rs74038038	1.00[AMR][1000 genomes]
rs74039171	0.83[AMR][1000 genomes]
rs74039243	1.00[AMR][1000 genomes]
rs74039244	1.00[AMR][1000 genomes]
rs74039247	1.00[AMR][1000 genomes]
rs8057495	0.83[AMR][1000 genomes]
rs8061795	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79868800-79874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:79869400-79872200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:79869800-79872400	Enhancers	K562	blood
4	chr16:79869800-79873600	Weak transcription	Placenta	Placenta
5	chr16:79870000-79872200	Enhancers	Ovary	ovary
6	chr16:79870200-79872200	Enhancers	Fetal Stomach	stomach
7	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
8	chr16:79870600-79873000	Weak transcription	Adipose Nuclei	Adipose
9	chr16:79871600-79872200	Enhancers	Brain Germinal Matrix	brain
10	chr16:79871600-79874400	Enhancers	Fetal Muscle Leg	muscle
11	chr16:79872000-79872600	Active TSS	Fetal Lung	lung
12	chr16:79872000-79873000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr16:79872000-79873000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr16:79872000-79873000	Active TSS	Stomach Smooth Muscle	stomach

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