Variant report

Variant	rs74039171
Chromosome Location	chr16:79757378-79757379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79748215..79750432-chr16:79755525..79757544,2	MCF-7	breast:
2	chr16:79757085..79759358-chr16:79764740..79767678,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56127354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61204574	0.83[AMR][1000 genomes]
rs61614910	1.00[AMR][1000 genomes]
rs74037480	0.83[AMR][1000 genomes]
rs74037484	0.83[AMR][1000 genomes]
rs74037487	0.83[AMR][1000 genomes]
rs74037488	0.83[AMR][1000 genomes]
rs74037494	0.83[AMR][1000 genomes]
rs74037611	0.85[AMR][1000 genomes]
rs74037612	0.85[AMR][1000 genomes]
rs74037622	0.85[AMR][1000 genomes]
rs74037857	0.83[AMR][1000 genomes]
rs74037858	0.83[AMR][1000 genomes]
rs74038035	0.83[AMR][1000 genomes]
rs74038038	0.83[AMR][1000 genomes]
rs74039243	0.83[AMR][1000 genomes]
rs74039244	0.83[AMR][1000 genomes]
rs74039247	0.83[AMR][1000 genomes]
rs8057495	1.00[AMR][1000 genomes]
rs8061795	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3405164	chr16:79754351-79759149	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79748200-79760400	Enhancers	Fetal Intestine Small	intestine
2	chr16:79748400-79760800	Enhancers	Fetal Intestine Large	intestine
3	chr16:79752000-79757400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:79752400-79757600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:79752800-79757800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:79754000-79759600	Enhancers	Duodenum Mucosa	Duodenum
7	chr16:79756000-79758600	Weak transcription	Fetal Lung	lung
8	chr16:79756200-79757400	Enhancers	Gastric	stomach
9	chr16:79756400-79757400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr16:79756400-79758600	Weak transcription	Fetal Muscle Leg	muscle
11	chr16:79756600-79757400	Weak transcription	Right Atrium	heart
12	chr16:79756600-79757400	Weak transcription	Stomach Mucosa	stomach
13	chr16:79756600-79757600	Weak transcription	Pancreas	Pancrea
14	chr16:79756600-79757600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr16:79756600-79757800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr16:79756600-79757800	Enhancers	Liver	Liver
17	chr16:79756800-79774200	Weak transcription	Ovary	ovary
18	chr16:79757000-79757400	Weak transcription	Esophagus	oesophagus
19	chr16:79757200-79757800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr16:79757200-79759200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr16:79757200-79759400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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