Variant report

Variant	rs61614910
Chromosome Location	chr16:79760673-79760674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79757405..79759517-chr16:79760609..79762850,3	MCF-7	breast:
2	chr16:79757858..79761276-chr16:79764812..79767945,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WWOX-2	chr16:79760254-79760856	NONHSAT143852
2	lnc-WWOX-2	chr16:79760254-79760856	NONHSAT143865

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56127354	1.00[AMR][1000 genomes]
rs61204574	0.83[AMR][1000 genomes]
rs74037480	0.83[AMR][1000 genomes]
rs74037484	0.83[AMR][1000 genomes]
rs74037487	0.83[AMR][1000 genomes]
rs74037488	0.83[AMR][1000 genomes]
rs74037494	0.83[AMR][1000 genomes]
rs74037611	0.85[AMR][1000 genomes]
rs74037612	0.85[AMR][1000 genomes]
rs74037622	0.85[AMR][1000 genomes]
rs74037857	0.83[AMR][1000 genomes]
rs74037858	0.83[AMR][1000 genomes]
rs74038035	0.83[AMR][1000 genomes]
rs74038038	0.83[AMR][1000 genomes]
rs74039171	1.00[AMR][1000 genomes]
rs74039243	0.83[AMR][1000 genomes]
rs74039244	0.83[AMR][1000 genomes]
rs74039247	0.83[AMR][1000 genomes]
rs8057495	1.00[AMR][1000 genomes]
rs8061795	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79748400-79760800	Enhancers	Fetal Intestine Large	intestine
2	chr16:79756800-79774200	Weak transcription	Ovary	ovary
3	chr16:79759400-79764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:79759600-79761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:79759600-79764200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr16:79760400-79763600	Weak transcription	Fetal Intestine Small	intestine

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