Variant report

Variant	rs74037494
Chromosome Location	chr16:79841942-79841943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56127354	0.83[AMR][1000 genomes]
rs61204574	1.00[AMR][1000 genomes]
rs61614910	0.83[AMR][1000 genomes]
rs74037480	1.00[AMR][1000 genomes]
rs74037484	1.00[AMR][1000 genomes]
rs74037487	1.00[AMR][1000 genomes]
rs74037488	1.00[AMR][1000 genomes]
rs74037493	0.83[AMR][1000 genomes]
rs74037623	0.83[AMR][1000 genomes]
rs74037627	0.83[AMR][1000 genomes]
rs74037857	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74037858	1.00[AMR][1000 genomes]
rs74038035	1.00[AMR][1000 genomes]
rs74038038	1.00[AMR][1000 genomes]
rs74039171	0.83[AMR][1000 genomes]
rs74039243	1.00[AMR][1000 genomes]
rs74039244	1.00[AMR][1000 genomes]
rs74039247	1.00[AMR][1000 genomes]
rs8057495	0.83[AMR][1000 genomes]
rs8061795	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79836200-79842400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:79839000-79844200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:79839800-79844800	Weak transcription	K562	blood
4	chr16:79840000-79842000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:79840000-79844200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr16:79841200-79842400	Weak transcription	Fetal Thymus	thymus
7	chr16:79841600-79842800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:79841600-79843000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:79841600-79843200	Enhancers	NHEK	skin
10	chr16:79841600-79844200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:79841800-79844800	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links