Variant report

Variant	rs74044025
Chromosome Location	chr13:39916838-39916839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55962112	1.00[AMR][1000 genomes]
rs56285908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56983422	1.00[AMR][1000 genomes]
rs57101154	1.00[AMR][1000 genomes]
rs73453717	1.00[AMR][1000 genomes]
rs74044026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044027	1.00[AMR][1000 genomes]
rs74044028	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044034	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044035	1.00[AMR][1000 genomes]
rs74044037	1.00[AMR][1000 genomes]
rs74044041	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39904200-39923600	Weak transcription	Ovary	ovary
2	chr13:39910600-39922400	Weak transcription	Aorta	Aorta
3	chr13:39910600-39924400	Weak transcription	Adipose Nuclei	Adipose
4	chr13:39912400-39920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:39912400-39924600	Weak transcription	Fetal Lung	lung
6	chr13:39913000-39920000	Weak transcription	HSMM	muscle
7	chr13:39913200-39919800	Weak transcription	Right Ventricle	heart
8	chr13:39913200-39922400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:39914000-39922400	Weak transcription	Gastric	stomach
10	chr13:39914200-39924400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:39914400-39922800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr13:39914800-39924600	Weak transcription	Fetal Stomach	stomach
13	chr13:39915000-39917200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:39915600-39918400	Strong transcription	Left Ventricle	heart
15	chr13:39915600-39919800	Weak transcription	Fetal Heart	heart
16	chr13:39915600-39920000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:39915800-39917400	Weak transcription	HSMMtube	muscle
18	chr13:39915800-39921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr13:39915800-39924200	Weak transcription	Osteobl	bone
20	chr13:39916000-39922200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:39916200-39928000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:39916600-39917400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:39916800-39918400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:39916800-39919600	Weak transcription	Fetal Muscle Leg	muscle
25	chr13:39916800-39928000	Weak transcription	NHDF-Ad	bronchial

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