Variant report

Variant	rs74044035
Chromosome Location	chr13:39928643-39928644
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55962112	1.00[AMR][1000 genomes]
rs56285908	1.00[AMR][1000 genomes]
rs56983422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57101154	1.00[AMR][1000 genomes]
rs73453717	1.00[AMR][1000 genomes]
rs74044025	1.00[AMR][1000 genomes]
rs74044026	1.00[AMR][1000 genomes]
rs74044027	1.00[AMR][1000 genomes]
rs74044028	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044030	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044034	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044037	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74044041	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39925200-39936800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr13:39925200-39938600	Weak transcription	Aorta	Aorta
3	chr13:39925400-39929200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:39925600-39928800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:39926400-39929800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:39928000-39928800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:39928000-39928800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:39928000-39928800	Enhancers	NHDF-Ad	bronchial
9	chr13:39928000-39929200	Enhancers	Fetal Heart	heart
10	chr13:39928400-39936400	Weak transcription	Left Ventricle	heart
11	chr13:39928400-39939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:39928400-39939000	Weak transcription	Right Atrium	heart
13	chr13:39928600-39929200	Weak transcription	Adipose Nuclei	Adipose
14	chr13:39928600-39929800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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