Variant report

Variant	rs74044041
Chromosome Location	chr13:39955864-39955865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COG6-4	chr13:39954215-39956328	l_815_chr13:39953252-39956328_testes

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55962112	1.00[AMR][1000 genomes]
rs56285908	1.00[AMR][1000 genomes]
rs56983422	1.00[AMR][1000 genomes]
rs57101154	1.00[AMR][1000 genomes]
rs74044025	1.00[AMR][1000 genomes]
rs74044026	1.00[AMR][1000 genomes]
rs74044027	1.00[AMR][1000 genomes]
rs74044028	1.00[AMR][1000 genomes]
rs74044030	1.00[AMR][1000 genomes]
rs74044034	1.00[AMR][1000 genomes]
rs74044035	1.00[AMR][1000 genomes]
rs74044037	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39939600-39959600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr13:39939800-39959800	Weak transcription	Fetal Lung	lung
3	chr13:39944400-39957400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:39945400-39959000	Weak transcription	Brain Substantia Nigra	brain
5	chr13:39946000-39959000	Weak transcription	NHDF-Ad	bronchial
6	chr13:39947600-39959000	Weak transcription	Right Atrium	heart
7	chr13:39947600-39960600	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:39947800-39957400	Weak transcription	Ovary	ovary
9	chr13:39947800-39959400	Weak transcription	Fetal Heart	heart
10	chr13:39950600-39958400	Weak transcription	Adipose Nuclei	Adipose
11	chr13:39952800-39959200	Weak transcription	Brain Anterior Caudate	brain
12	chr13:39954200-39959000	Weak transcription	Right Ventricle	heart
13	chr13:39954400-39959200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr13:39954400-39959600	Weak transcription	Osteobl	bone
15	chr13:39954600-39957400	Weak transcription	Aorta	Aorta
16	chr13:39954600-39958400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr13:39954600-39959000	Weak transcription	NH-A	brain
18	chr13:39954600-39959400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:39955000-39956000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:39955000-39956000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr13:39955200-39956400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:39955600-39959000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:39955800-39959000	Weak transcription	Left Ventricle	heart

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