Variant report

Variant	rs74045773
Chromosome Location	chr14:38400868-38400869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56120250	1.00[AMR][1000 genomes]
rs57747179	1.00[AFR][1000 genomes]
rs59375635	1.00[AMR][1000 genomes]
rs60265164	1.00[AMR][1000 genomes]
rs74045692	1.00[AMR][1000 genomes]
rs74045694	1.00[AMR][1000 genomes]
rs74045695	1.00[AMR][1000 genomes]
rs74045702	1.00[AMR][1000 genomes]
rs74045751	1.00[AMR][1000 genomes]
rs74045753	1.00[AMR][1000 genomes]
rs74045771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045775	1.00[AMR][1000 genomes]
rs74045783	1.00[AMR][1000 genomes]
rs74045789	1.00[AMR][1000 genomes]
rs74045790	1.00[AMR][1000 genomes]
rs74048803	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38399000-38401000	Enhancers	NHDF-Ad	bronchial
2	chr14:38400000-38401000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:38400000-38401800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr14:38400600-38401000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:38400600-38401400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:38400800-38401200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:38400800-38401200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:38400800-38401200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:38400800-38401200	Enhancers	Brain Germinal Matrix	brain
10	chr14:38400800-38401600	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links