Variant report

Variant	rs74045775
Chromosome Location	chr14:38409224-38409225
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56120250	1.00[AMR][1000 genomes]
rs59375635	1.00[AMR][1000 genomes]
rs60265164	1.00[AMR][1000 genomes]
rs74045692	1.00[AMR][1000 genomes]
rs74045694	1.00[AMR][1000 genomes]
rs74045695	1.00[AMR][1000 genomes]
rs74045702	1.00[AMR][1000 genomes]
rs74045751	1.00[AMR][1000 genomes]
rs74045753	1.00[AMR][1000 genomes]
rs74045771	1.00[AMR][1000 genomes]
rs74045773	1.00[AMR][1000 genomes]
rs74045774	1.00[AMR][1000 genomes]
rs74045783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045789	1.00[AMR][1000 genomes]
rs74045790	1.00[AMR][1000 genomes]
rs74048803	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38406600-38409600	Weak transcription	Gastric	stomach
2	chr14:38407000-38411000	Weak transcription	Stomach Mucosa	stomach
3	chr14:38409200-38409400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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