Variant report

Variant	rs74045790
Chromosome Location	chr14:38465782-38465783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59375635	1.00[AMR][1000 genomes]
rs60265164	1.00[AMR][1000 genomes]
rs74045695	1.00[AMR][1000 genomes]
rs74045702	1.00[AMR][1000 genomes]
rs74045751	1.00[AMR][1000 genomes]
rs74045753	1.00[AMR][1000 genomes]
rs74045771	1.00[AMR][1000 genomes]
rs74045773	1.00[AMR][1000 genomes]
rs74045774	1.00[AMR][1000 genomes]
rs74045775	1.00[AMR][1000 genomes]
rs74045783	1.00[AMR][1000 genomes]
rs74045789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74048803	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38463800-38465800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr14:38463800-38466000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr14:38463800-38466200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:38464200-38471000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:38464800-38470000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:38465000-38470000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:38465000-38470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:38465000-38471000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:38465000-38473000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:38465000-38473200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:38465200-38468400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:38465200-38470000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:38465600-38467200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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