Variant report

Variant	rs74055103
Chromosome Location	chr11:8700660-8700661
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:8700607-8700937	MCF-7	breast:	n/a	n/a
2	POLR2A	chr11:8700563-8700802	HepG2	liver:	n/a	n/a
3	FOXA1	chr11:8700488-8700980	HepG2	liver:	n/a	n/a
4	FOXA1	chr11:8700509-8700936	HepG2	liver:	n/a	n/a
5	MAX	chr11:8700353-8701108	HepG2	liver:	n/a	n/a
6	MAX	chr11:8700619-8700922	HepG2	liver:	n/a	n/a
7	POLR2A	chr11:8700198-8712489	PANC-1	pancreas:	n/a	n/a
8	MAX	chr11:8700602-8700927	K562	blood:	n/a	n/a
9	JUND	chr11:8700619-8700904	HepG2	liver:	n/a	n/a
10	USF1	chr11:8700639-8700900	HepG2	liver:	n/a	chr11:8700807-8700818
11	MXI1	chr11:8700454-8700957	HepG2	liver:	n/a	n/a
12	FOXA1	chr11:8700463-8701018	HepG2	liver:	n/a	n/a
13	MYBL2	chr11:8700451-8701015	HepG2	liver:	n/a	n/a
14	FOXA1	chr11:8700457-8700975	HepG2	liver:	n/a	n/a
15	FOXA2	chr11:8700557-8700884	A549	lung:	n/a	n/a
16	FOXA2	chr11:8700559-8700889	HepG2	liver:	n/a	n/a
17	CHD2	chr11:8700584-8700762	HepG2	liver:	n/a	n/a
18	USF1	chr11:8700649-8700876	HepG2	liver:	n/a	chr11:8700807-8700818
19	JUND	chr11:8700601-8700931	HepG2	liver:	n/a	n/a
20	MAX	chr11:8700429-8701044	HepG2	liver:	n/a	n/a
21	POLR2A	chr11:8700610-8712688	K562	blood:	n/a	n/a
22	SMC3	chr11:8700591-8700867	HepG2	liver:	n/a	n/a
23	USF2	chr11:8700509-8700868	HepG2	liver:	n/a	chr11:8700808-8700819

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8699371..8704185-chr11:8984475..8986762,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPL27A-1	chr11:8700636-8700925	ENSG00000254900.1

No data

Variant related genes	Relation type
RPL27A	TF binding region
ENSG00000254860	Chromatin interaction
ENSG00000175348	Chromatin interaction

rs_ID	r²[population]
rs57212881	1.00[AMR][1000 genomes]
rs60619855	1.00[AMR][1000 genomes]
rs74053134	1.00[AMR][1000 genomes]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8637000-8703200	Weak transcription	Small Intestine	intestine
2	chr11:8684000-8701600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr11:8684400-8701400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:8690000-8703000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:8690400-8701200	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr11:8693600-8703000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:8693600-8703200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:8693600-8703200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:8693600-8703200	Weak transcription	Fetal Lung	lung
10	chr11:8693600-8703400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:8693600-8703400	Weak transcription	Ovary	ovary
12	chr11:8693800-8701000	Weak transcription	Gastric	stomach
13	chr11:8693800-8703000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:8693800-8703000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:8693800-8703000	Weak transcription	Hela-S3	cervix
16	chr11:8693800-8703200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:8693800-8703200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:8693800-8703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:8693800-8703200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:8693800-8703200	Weak transcription	Brain Substantia Nigra	brain
21	chr11:8693800-8703200	Weak transcription	Colonic Mucosa	Colon
22	chr11:8693800-8703200	Weak transcription	Fetal Brain Female	brain
23	chr11:8693800-8703400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:8693800-8703400	Weak transcription	Brain Germinal Matrix	brain
25	chr11:8693800-8703600	Weak transcription	Spleen	Spleen
26	chr11:8694000-8700800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:8694000-8701000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:8694000-8701400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:8694000-8701800	Weak transcription	Primary B cells from cord blood	blood
30	chr11:8694000-8702200	Weak transcription	HSMM	muscle
31	chr11:8694000-8702200	Weak transcription	K562	blood
32	chr11:8694000-8703000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:8694000-8703000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:8694000-8703000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:8694000-8703000	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:8694000-8703200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:8694000-8703200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:8694000-8703200	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:8694000-8703200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:8694000-8703200	Weak transcription	Colon Smooth Muscle	Colon
41	chr11:8694000-8703200	Weak transcription	Fetal Brain Male	brain
42	chr11:8694000-8703200	Weak transcription	Fetal Kidney	kidney
43	chr11:8694000-8703200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:8694000-8703200	Weak transcription	Thymus	Thymus
45	chr11:8694000-8703200	Weak transcription	NH-A	brain
46	chr11:8694000-8703200	Weak transcription	Osteobl	bone
47	chr11:8694000-8703400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:8694000-8703400	Weak transcription	Esophagus	oesophagus
49	chr11:8694000-8703400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr11:8694200-8700800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links