Variant report

Variant	rs74060663
Chromosome Location	chr14:70447521-70447522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70430216..70432462-chr14:70446233..70448527,2	MCF-7	breast:
2	chr14:70439245..70443194-chr14:70444532..70447798,3	MCF-7	breast:
3	chr14:70436382..70438821-chr14:70446582..70449238,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11848277	1.00[EUR][1000 genomes]
rs2069109	1.00[EUR][1000 genomes]
rs28456261	1.00[EUR][1000 genomes]
rs28468655	1.00[EUR][1000 genomes]
rs56290405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56723492	1.00[EUR][1000 genomes]
rs56837831	1.00[EUR][1000 genomes]
rs57139172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57292391	1.00[EUR][1000 genomes]
rs57510137	1.00[AMR][1000 genomes]
rs57709257	1.00[EUR][1000 genomes]
rs58673738	1.00[EUR][1000 genomes]
rs59918631	1.00[AMR][1000 genomes]
rs60048839	1.00[EUR][1000 genomes]
rs61059545	1.00[EUR][1000 genomes]
rs61226888	1.00[EUR][1000 genomes]
rs61253398	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61382738	1.00[AMR][1000 genomes]
rs61612924	1.00[AMR][1000 genomes]
rs6573926	1.00[EUR][1000 genomes]
rs7148591	1.00[EUR][1000 genomes]
rs7150074	1.00[EUR][1000 genomes]
rs74060658	1.00[EUR][1000 genomes]
rs74060659	1.00[EUR][1000 genomes]
rs74060660	1.00[EUR][1000 genomes]
rs74060661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060665	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060680	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74061016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74061017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74061027	1.00[AMR][1000 genomes]
rs74061030	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70418800-70448600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:70429800-70450000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:70433200-70454000	Strong transcription	Liver	Liver
4	chr14:70439000-70458800	Weak transcription	Gastric	stomach
5	chr14:70439800-70477200	Weak transcription	Spleen	Spleen
6	chr14:70441200-70448600	Weak transcription	Right Atrium	heart
7	chr14:70441400-70451800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:70442200-70451800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:70444200-70448400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:70444600-70449000	Weak transcription	Fetal Brain Male	brain
11	chr14:70445600-70449800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:70445600-70450600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr14:70445800-70448400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:70445800-70450400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:70446000-70449400	Enhancers	Fetal Intestine Large	intestine
16	chr14:70446000-70449600	Weak transcription	Fetal Brain Female	brain
17	chr14:70446200-70449800	Enhancers	HMEC	breast
18	chr14:70446400-70448000	Enhancers	Fetal Muscle Leg	muscle
19	chr14:70446400-70449600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:70446400-70449600	Enhancers	NHEK	skin
21	chr14:70446400-70449800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:70446600-70447600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:70446600-70448800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:70446800-70447800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:70446800-70448000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:70446800-70448200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:70446800-70449200	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:70446800-70449800	Enhancers	Pancreas	Pancrea
29	chr14:70447000-70447600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:70447000-70447600	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr14:70447000-70447600	Bivalent Enhancer	Fetal Stomach	stomach
32	chr14:70447000-70447800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr14:70447000-70448200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr14:70447000-70448200	Enhancers	Brain Angular Gyrus	brain
35	chr14:70447000-70448200	Enhancers	Brain Germinal Matrix	brain
36	chr14:70447000-70448400	Enhancers	Fetal Muscle Trunk	muscle
37	chr14:70447000-70448400	Enhancers	HepG2	liver
38	chr14:70447000-70448600	Enhancers	Fetal Intestine Small	intestine
39	chr14:70447000-70449200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:70447000-70454400	Genic enhancers	Hela-S3	cervix
41	chr14:70447200-70447600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr14:70447200-70447600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr14:70447200-70447600	Flanking Active TSS	Brain Substantia Nigra	brain
44	chr14:70447200-70447800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:70447200-70448000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr14:70447200-70448600	Weak transcription	Psoas Muscle	Psoas
47	chr14:70447200-70449200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:70447400-70447600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr14:70447400-70447800	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr14:70447400-70448600	Enhancers	Brain Anterior Caudate	brain

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