Variant report
| Variant | rs11848277 |
|---|---|
| Chromosome Location | chr14:70303930-70303931 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs2069109 | 1.00[EUR][1000 genomes] |
| rs28456261 | 1.00[EUR][1000 genomes] |
| rs28468655 | 1.00[EUR][1000 genomes] |
| rs28767840 | 1.00[EUR][1000 genomes] |
| rs56290405 | 1.00[EUR][1000 genomes] |
| rs56723492 | 1.00[EUR][1000 genomes] |
| rs56837831 | 1.00[EUR][1000 genomes] |
| rs57139172 | 1.00[EUR][1000 genomes] |
| rs57292391 | 1.00[EUR][1000 genomes] |
| rs57709257 | 1.00[EUR][1000 genomes] |
| rs60048839 | 1.00[EUR][1000 genomes] |
| rs61059545 | 1.00[EUR][1000 genomes] |
| rs61130025 | 1.00[EUR][1000 genomes] |
| rs61226888 | 1.00[EUR][1000 genomes] |
| rs61253398 | 1.00[EUR][1000 genomes] |
| rs7148591 | 1.00[EUR][1000 genomes] |
| rs7150074 | 1.00[EUR][1000 genomes] |
| rs73281568 | 1.00[EUR][1000 genomes] |
| rs74060658 | 1.00[EUR][1000 genomes] |
| rs74060659 | 1.00[EUR][1000 genomes] |
| rs74060660 | 1.00[EUR][1000 genomes] |
| rs74060661 | 1.00[EUR][1000 genomes] |
| rs74060662 | 1.00[EUR][1000 genomes] |
| rs74060663 | 1.00[EUR][1000 genomes] |
| rs74060677 | 1.00[EUR][1000 genomes] |
| rs74060680 | 1.00[EUR][1000 genomes] |
| rs74061016 | 1.00[EUR][1000 genomes] |
| rs74061017 | 1.00[EUR][1000 genomes] |
| rs8022592 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456336 | chr14:70081956-70574149 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| 2 | nsv565007 | chr14:70081956-70574149 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70295800-70306400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
