Variant report

Variant	rs61059545
Chromosome Location	chr14:70348932-70348933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70347408..70348984-chr14:70352292..70354951,2	MCF-7	breast:
2	chr14:70345017..70347390-chr14:70347953..70350433,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198732	Chromatin interaction
ENSG00000242071	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11848277	1.00[EUR][1000 genomes]
rs2069109	1.00[EUR][1000 genomes]
rs28456261	1.00[EUR][1000 genomes]
rs28468655	1.00[EUR][1000 genomes]
rs28767840	1.00[EUR][1000 genomes]
rs56290405	1.00[EUR][1000 genomes]
rs56723492	1.00[EUR][1000 genomes]
rs56837831	1.00[EUR][1000 genomes]
rs57139172	1.00[EUR][1000 genomes]
rs57292391	1.00[EUR][1000 genomes]
rs57709257	1.00[EUR][1000 genomes]
rs60048839	1.00[EUR][1000 genomes]
rs61226888	1.00[EUR][1000 genomes]
rs61253398	1.00[EUR][1000 genomes]
rs7148591	1.00[EUR][1000 genomes]
rs7150074	1.00[EUR][1000 genomes]
rs73281568	1.00[EUR][1000 genomes]
rs74060658	1.00[EUR][1000 genomes]
rs74060659	1.00[EUR][1000 genomes]
rs74060660	1.00[EUR][1000 genomes]
rs74060661	1.00[EUR][1000 genomes]
rs74060662	1.00[EUR][1000 genomes]
rs74060663	1.00[EUR][1000 genomes]
rs74060677	1.00[EUR][1000 genomes]
rs74060680	1.00[EUR][1000 genomes]
rs74061016	1.00[EUR][1000 genomes]
rs74061017	1.00[EUR][1000 genomes]
rs8022592	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70345800-70349400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:70346000-70349600	Active TSS	Fetal Brain Female	brain
3	chr14:70346800-70349000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:70347200-70349200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:70347200-70349600	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr14:70347400-70349400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:70347400-70349800	Enhancers	Fetal Stomach	stomach
8	chr14:70347800-70349000	Enhancers	Brain Substantia Nigra	brain
9	chr14:70348000-70354200	Weak transcription	Psoas Muscle	Psoas
10	chr14:70348200-70349000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:70348200-70349400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:70348200-70349400	Flanking Active TSS	Hela-S3	cervix
13	chr14:70348400-70349000	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:70348400-70353400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:70348600-70349400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr14:70348600-70349400	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr14:70348600-70349600	Enhancers	Fetal Brain Male	brain
18	chr14:70348600-70350600	Enhancers	Liver	Liver
19	chr14:70348800-70349000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:70348800-70349000	Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr14:70348800-70349000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
22	chr14:70348800-70349000	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr14:70348800-70349200	Enhancers	HepG2	liver
24	chr14:70348800-70349600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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