Variant report
| Variant | rs74078011 |
|---|---|
| Chromosome Location | chr12:42690624-42690625 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1079985 | 1.00[AMR][1000 genomes] |
| rs17090974 | 1.00[AMR][1000 genomes] |
| rs17090988 | 1.00[AMR][1000 genomes] |
| rs1982507 | 1.00[AMR][1000 genomes] |
| rs55699566 | 1.00[AMR][1000 genomes] |
| rs56126783 | 1.00[AMR][1000 genomes] |
| rs56315321 | 1.00[AMR][1000 genomes] |
| rs56400220 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56404347 | 1.00[AMR][1000 genomes] |
| rs57096261 | 1.00[AMR][1000 genomes] |
| rs58745493 | 1.00[AMR][1000 genomes] |
| rs60164617 | 1.00[AMR][1000 genomes] |
| rs60635137 | 1.00[AMR][1000 genomes] |
| rs74077816 | 1.00[AMR][1000 genomes] |
| rs74078013 | 0.80[AFR][1000 genomes] |
| rs74078160 | 1.00[AMR][1000 genomes] |
| rs74078165 | 1.00[AMR][1000 genomes] |
| rs74078171 | 1.00[AMR][1000 genomes] |
| rs74078173 | 1.00[AMR][1000 genomes] |
| rs74078174 | 1.00[AMR][1000 genomes] |
| rs74078176 | 1.00[AMR][1000 genomes] |
| rs74078178 | 1.00[AMR][1000 genomes] |
| rs74078179 | 1.00[AMR][1000 genomes] |
| rs74078180 | 1.00[AMR][1000 genomes] |
| rs74078194 | 1.00[AMR][1000 genomes] |
| rs74078197 | 1.00[AMR][1000 genomes] |
| rs74081009 | 1.00[AMR][1000 genomes] |
| rs74081028 | 1.00[AMR][1000 genomes] |
| rs74081065 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430505 | chr12:42297931-42720773 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv1048971 | chr12:42651976-42801204 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044790 | chr12:42672255-43344184 | Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 29 gene(s) | inside rSNPs | diseases |
| 4 | nsv541483 | chr12:42672255-43344184 | Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 29 gene(s) | inside rSNPs | diseases |
| 5 | esv1809322 | chr12:42682065-42699107 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42690600-42690800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
