The 2.0 version of rSNPBase

Variant report

Variant rs17090988
Chromosome Location chr12:42518799-42518800
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:42471800-42524400 Weak transcription Esophagus oesophagus
2 chr12:42474600-42518800 Weak transcription Brain Anterior Caudate brain
3 chr12:42476000-42524400 Weak transcription Gastric stomach
4 chr12:42476200-42524400 Weak transcription Pancreas Pancrea
5 chr12:42476600-42523800 Weak transcription Hela-S3 cervix
6 chr12:42484400-42524800 Weak transcription Right Ventricle heart
7 chr12:42493000-42524400 Weak transcription Brain Substantia Nigra brain
8 chr12:42493000-42534400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr12:42493200-42519200 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr12:42497200-42518800 Weak transcription Psoas Muscle Psoas
11 chr12:42499400-42518800 Weak transcription Fetal Kidney kidney
12 chr12:42501000-42518800 Weak transcription Colon Smooth Muscle Colon
13 chr12:42505800-42518800 Weak transcription H1 Cell Line embryonic stem cell
14 chr12:42505800-42518800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr12:42505800-42518800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr12:42505800-42522400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr12:42505800-42537000 Weak transcription Fetal Stomach stomach
18 chr12:42505800-42537000 Weak transcription Lung lung
19 chr12:42508400-42524600 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr12:42509600-42519400 Weak transcription Fetal Muscle Leg muscle
21 chr12:42509800-42518800 Weak transcription Brain Germinal Matrix brain
22 chr12:42510000-42518800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr12:42511000-42518800 Weak transcription Brain Inferior Temporal Lobe brain
24 chr12:42511200-42519000 Weak transcription Brain Cingulate Gyrus brain
25 chr12:42511600-42518800 Weak transcription NHEK skin
26 chr12:42511800-42518800 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr12:42511800-42518800 Weak transcription Brain Hippocampus Middle brain
28 chr12:42511800-42518800 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr12:42512000-42519000 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr12:42512000-42522200 Weak transcription HMEC breast
31 chr12:42512000-42537400 Weak transcription Ovary ovary
32 chr12:42512400-42519000 Weak transcription Primary B cells from cord blood blood
33 chr12:42512400-42520800 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr12:42512400-42521800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr12:42512400-42523800 Weak transcription Rectal Smooth Muscle rectum
36 chr12:42512400-42523800 Weak transcription HSMM muscle
37 chr12:42512400-42537000 Weak transcription Placenta Placenta
38 chr12:42512600-42518800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr12:42512600-42518800 Weak transcription Fetal Lung lung
40 chr12:42512600-42518800 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr12:42512600-42518800 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr12:42512600-42518800 Weak transcription Stomach Smooth Muscle stomach
43 chr12:42512600-42519000 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr12:42512600-42519000 Weak transcription Adipose Nuclei Adipose
45 chr12:42512600-42519000 Weak transcription Brain Angular Gyrus brain
46 chr12:42512600-42519400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
47 chr12:42512600-42524400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr12:42512600-42524600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
49 chr12:42512800-42518800 Weak transcription Primary monocytes fromperipheralblood blood
50 chr12:42512800-42518800 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015