Variant report

Variant	rs17090865
Chromosome Location	chr12:42404081-42404082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17090843	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090974	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17090988	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs55699566	1.00[AMR][1000 genomes]
rs56126783	1.00[AMR][1000 genomes]
rs56183709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56404347	1.00[AMR][1000 genomes]
rs58480950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58745493	1.00[AMR][1000 genomes]
rs60164617	1.00[AMR][1000 genomes]
rs74077451	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077472	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077474	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077475	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077477	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077816	1.00[AMR][1000 genomes]
rs74078160	1.00[AMR][1000 genomes]
rs74078165	1.00[AMR][1000 genomes]
rs74078171	1.00[AMR][1000 genomes]
rs74078173	1.00[AMR][1000 genomes]
rs74078174	1.00[AMR][1000 genomes]
rs74078176	1.00[AMR][1000 genomes]
rs74078178	1.00[AMR][1000 genomes]
rs74078179	1.00[AMR][1000 genomes]
rs74078180	1.00[AMR][1000 genomes]
rs74078194	1.00[AMR][1000 genomes]
rs74078197	1.00[AMR][1000 genomes]
rs74081009	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42402800-42417000	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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