Variant report
Variant | rs74077485 |
---|---|
Chromosome Location | chr12:42418723-42418724 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:42416637..42419148-chr12:42718725..42720773,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000134283 | Chromatin interaction |
ENSG00000139168 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs17090843 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17090865 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs17090974 | 1.00[AMR][1000 genomes] |
rs17090988 | 1.00[AMR][1000 genomes] |
rs55699566 | 1.00[AMR][1000 genomes] |
rs56126783 | 1.00[AMR][1000 genomes] |
rs56183709 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56404347 | 1.00[AMR][1000 genomes] |
rs58480950 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58745493 | 1.00[AMR][1000 genomes] |
rs60164617 | 1.00[AMR][1000 genomes] |
rs74077451 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74077472 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74077474 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74077475 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74077477 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74077492 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74077499 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74077816 | 1.00[AMR][1000 genomes] |
rs74078160 | 1.00[AMR][1000 genomes] |
rs74078165 | 1.00[AMR][1000 genomes] |
rs74078171 | 1.00[AMR][1000 genomes] |
rs74078173 | 1.00[AMR][1000 genomes] |
rs74078174 | 1.00[AMR][1000 genomes] |
rs74078176 | 1.00[AMR][1000 genomes] |
rs74078178 | 1.00[AMR][1000 genomes] |
rs74078179 | 1.00[AMR][1000 genomes] |
rs74078180 | 1.00[AMR][1000 genomes] |
rs74078194 | 1.00[AMR][1000 genomes] |
rs74078197 | 1.00[AMR][1000 genomes] |
rs74081009 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv430505 | chr12:42297931-42720773 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
2 | nsv832387 | chr12:42345541-42465505 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:42418200-42418800 | Enhancers | Brain Germinal Matrix | brain |