Variant report
| Variant | rs74077472 |
|---|---|
| Chromosome Location | chr12:42384866-42384867 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:42381754..42384165-chr12:42384575..42386988,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs17090843 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090865 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090974 | 1.00[AMR][1000 genomes] |
| rs17090988 | 1.00[AMR][1000 genomes] |
| rs56126783 | 1.00[AMR][1000 genomes] |
| rs56183709 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56404347 | 1.00[AMR][1000 genomes] |
| rs58480950 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58745493 | 1.00[AMR][1000 genomes] |
| rs60164617 | 1.00[AMR][1000 genomes] |
| rs74077451 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74077474 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74077475 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74077477 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74077485 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74077492 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74077499 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74077816 | 1.00[AMR][1000 genomes] |
| rs74078160 | 1.00[AMR][1000 genomes] |
| rs74078165 | 1.00[AMR][1000 genomes] |
| rs74078171 | 1.00[AMR][1000 genomes] |
| rs74078173 | 1.00[AMR][1000 genomes] |
| rs74078174 | 1.00[AMR][1000 genomes] |
| rs74078176 | 1.00[AMR][1000 genomes] |
| rs74078178 | 1.00[AMR][1000 genomes] |
| rs74078179 | 1.00[AMR][1000 genomes] |
| rs74078180 | 1.00[AMR][1000 genomes] |
| rs74078194 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430505 | chr12:42297931-42720773 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv832387 | chr12:42345541-42465505 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42384600-42385800 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
