Variant report

Variant	rs74085978
Chromosome Location	chr12:38532274-38532275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:38532267..38533149-chr12:38709875..38710612,2	K562	blood:
2	chr12:38532230..38532845-chr12:38709831..38710738,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175548	Chromatin interaction

Extended variants
information (count: 216 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs11829229	0.88[AFR][1000 genomes]
rs11830129	0.94[AFR][1000 genomes]
rs11830158	0.94[AFR][1000 genomes]
rs11830176	0.94[AFR][1000 genomes]
rs11830221	0.94[AFR][1000 genomes]
rs11830432	0.94[AFR][1000 genomes]
rs11831119	0.94[AFR][1000 genomes]
rs11831227	0.82[AFR][1000 genomes]
rs11831843	0.94[AFR][1000 genomes]
rs11832000	0.88[AFR][1000 genomes]
rs11832018	0.88[AFR][1000 genomes]
rs11832700	0.88[AFR][1000 genomes]
rs11832882	0.94[AFR][1000 genomes]
rs11832891	0.82[AFR][1000 genomes]
rs11832921	0.94[AFR][1000 genomes]
rs11833006	0.94[AFR][1000 genomes]
rs11833232	0.82[AFR][1000 genomes]
rs11833735	0.94[AFR][1000 genomes]
rs11833933	0.82[AFR][1000 genomes]
rs11833965	0.94[AFR][1000 genomes]
rs11834147	0.88[AFR][1000 genomes]
rs11834360	0.94[AFR][1000 genomes]
rs11834392	0.82[AFR][1000 genomes]
rs11834410	0.94[AFR][1000 genomes]
rs11835168	0.82[AFR][1000 genomes]
rs11836010	0.94[AFR][1000 genomes]
rs11836404	0.88[AFR][1000 genomes]
rs11837650	0.88[AFR][1000 genomes]
rs11837990	0.94[AFR][1000 genomes]
rs12099997	0.88[AFR][1000 genomes]
rs1471914	0.82[AFR][1000 genomes]
rs1818739	0.94[AFR][1000 genomes]
rs1825809	0.88[AFR][1000 genomes]
rs1825811	0.88[AFR][1000 genomes]
rs1843882	0.82[AFR][1000 genomes]
rs1915398	0.84[AFR][1000 genomes]
rs1915399	0.94[AFR][1000 genomes]
rs2387835	0.85[AFR][1000 genomes]
rs35656927	0.82[AFR][1000 genomes]
rs55743858	0.94[AFR][1000 genomes]
rs55768010	0.85[AFR][1000 genomes]
rs55776315	0.88[AFR][1000 genomes]
rs56002216	0.85[AFR][1000 genomes]
rs56027605	0.82[AFR][1000 genomes]
rs56065645	0.94[AFR][1000 genomes]
rs56079422	0.81[AFR][1000 genomes]
rs56088913	0.82[AFR][1000 genomes]
rs56091975	0.88[AFR][1000 genomes]
rs56123328	0.88[AFR][1000 genomes]
rs56142253	0.88[AFR][1000 genomes]
rs56159780	0.88[AFR][1000 genomes]
rs56184726	0.88[AFR][1000 genomes]
rs56231602	0.81[AFR][1000 genomes]
rs56244949	0.88[AFR][1000 genomes]
rs56294625	0.88[AFR][1000 genomes]
rs56343916	0.88[AFR][1000 genomes]
rs56349564	0.88[AFR][1000 genomes]
rs56754857	0.94[AFR][1000 genomes]
rs56811896	0.88[AFR][1000 genomes]
rs57316209	0.88[AFR][1000 genomes]
rs57816874	0.88[AFR][1000 genomes]
rs58252063	0.94[AFR][1000 genomes]
rs58650444	0.88[AFR][1000 genomes]
rs58732085	0.88[AFR][1000 genomes]
rs58796629	0.88[AFR][1000 genomes]
rs59010755	0.94[AFR][1000 genomes]
rs59305523	0.88[AFR][1000 genomes]
rs59776883	0.88[AFR][1000 genomes]
rs59791230	0.94[AFR][1000 genomes]
rs59962191	0.94[AFR][1000 genomes]
rs60002028	0.88[AFR][1000 genomes]
rs60005113	0.94[AFR][1000 genomes]
rs60235591	0.82[AFR][1000 genomes]
rs60502147	0.82[AFR][1000 genomes]
rs60514335	0.82[AFR][1000 genomes]
rs60858525	0.94[AFR][1000 genomes]
rs60919057	0.81[AFR][1000 genomes]
rs61000919	0.94[AFR][1000 genomes]
rs61142797	0.88[AFR][1000 genomes]
rs61162973	0.82[AFR][1000 genomes]
rs61276173	0.94[AFR][1000 genomes]
rs74082000	0.82[AFR][1000 genomes]
rs74083002	0.88[AFR][1000 genomes]
rs74084803	0.88[AFR][1000 genomes]
rs74084810	0.88[AFR][1000 genomes]
rs74084813	0.88[AFR][1000 genomes]
rs74084830	0.82[AFR][1000 genomes]
rs74084832	0.88[AFR][1000 genomes]
rs74084837	0.88[AFR][1000 genomes]
rs74084845	0.88[AFR][1000 genomes]
rs74084854	0.88[AFR][1000 genomes]
rs74084856	0.88[AFR][1000 genomes]
rs74084857	0.88[AFR][1000 genomes]
rs74084866	0.88[AFR][1000 genomes]
rs74084873	0.82[AFR][1000 genomes]
rs74084874	0.88[AFR][1000 genomes]
rs74084875	0.88[AFR][1000 genomes]
rs74084877	0.88[AFR][1000 genomes]
rs74084887	0.88[AFR][1000 genomes]
rs74084888	0.88[AFR][1000 genomes]
rs74084890	0.88[AFR][1000 genomes]
rs74084891	0.88[AFR][1000 genomes]
rs74084892	0.88[AFR][1000 genomes]
rs74085300	0.94[AFR][1000 genomes]
rs74085530	0.88[AFR][1000 genomes]
rs74085531	0.88[AFR][1000 genomes]
rs74085537	0.88[AFR][1000 genomes]
rs74085542	0.88[AFR][1000 genomes]
rs74085545	0.82[AFR][1000 genomes]
rs74085944	0.88[AFR][1000 genomes]
rs74085948	0.88[AFR][1000 genomes]
rs74085949	0.88[AFR][1000 genomes]
rs74085950	0.82[AFR][1000 genomes]
rs74085963	0.94[AFR][1000 genomes]
rs74085968	0.94[AFR][1000 genomes]
rs74085976	0.94[AFR][1000 genomes]
rs74085977	0.94[AFR][1000 genomes]
rs74085979	0.84[AFR][1000 genomes]
rs74085980	0.94[AFR][1000 genomes]
rs74085981	0.94[AFR][1000 genomes]
rs74086218	0.82[AFR][1000 genomes]
rs74086219	0.82[AFR][1000 genomes]
rs74086228	0.82[AFR][1000 genomes]
rs74086232	0.82[AFR][1000 genomes]
rs74086234	0.82[AFR][1000 genomes]
rs74086238	0.82[AFR][1000 genomes]
rs74086239	0.82[AFR][1000 genomes]
rs74086242	0.82[AFR][1000 genomes]
rs74086246	0.82[AFR][1000 genomes]
rs74086247	0.82[AFR][1000 genomes]
rs74086249	0.82[AFR][1000 genomes]
rs74086251	0.82[AFR][1000 genomes]
rs74087411	0.94[AFR][1000 genomes]
rs74087412	0.94[AFR][1000 genomes]
rs74087414	0.94[AFR][1000 genomes]
rs74087415	0.94[AFR][1000 genomes]
rs74087417	0.94[AFR][1000 genomes]
rs74087419	0.94[AFR][1000 genomes]
rs74087425	0.94[AFR][1000 genomes]
rs74087427	0.94[AFR][1000 genomes]
rs74087428	0.94[AFR][1000 genomes]
rs74087431	0.94[AFR][1000 genomes]
rs74087435	0.88[AFR][1000 genomes]
rs74087437	0.88[AFR][1000 genomes]
rs74087444	0.88[AFR][1000 genomes]
rs74087451	0.82[AFR][1000 genomes]
rs74087453	0.88[AFR][1000 genomes]
rs74087454	0.88[AFR][1000 genomes]
rs74087456	0.82[AFR][1000 genomes]
rs74087458	0.85[AFR][1000 genomes]
rs74087462	0.88[AFR][1000 genomes]
rs74087463	0.88[AFR][1000 genomes]
rs74087470	0.88[AFR][1000 genomes]
rs74087472	0.88[AFR][1000 genomes]
rs74087475	0.82[AFR][1000 genomes]
rs74087477	0.88[AFR][1000 genomes]
rs74087488	0.88[AFR][1000 genomes]
rs74087493	0.88[AFR][1000 genomes]
rs9783485	0.88[AFR][1000 genomes]
rs9919754	0.88[AFR][1000 genomes]
rs9919778	0.88[AFR][1000 genomes]
rs9919813	0.88[AFR][1000 genomes]
rs9943684	0.85[AFR][1000 genomes]
rs9943685	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043459	chr12:37857751-38662460	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050718	chr12:37857751-38757302	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv898972	chr12:37857899-38719455	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv898973	chr12:37913469-38733094	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv898974	chr12:37913469-38881918	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1035849	chr12:37929227-38640613	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv898976	chr12:37964922-38640613	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv898978	chr12:37969625-38624795	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv898984	chr12:38015951-38553973	Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv898985	chr12:38015951-38856607	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv898986	chr12:38015951-38922227	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	esv2422349	chr12:38103874-38761647	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	esv2422488	chr12:38103874-39070734	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv898992	chr12:38106133-38959053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
15	nsv1052762	chr12:38169669-38640955	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv1039580	chr12:38169669-38844008	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv1047388	chr12:38169669-38949760	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
18	nsv1047550	chr12:38207030-38908242	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
19	nsv1035850	chr12:38207030-38912512	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
20	nsv558571	chr12:38242029-38557886	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv558572	chr12:38242029-38708549	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
22	nsv469355	chr12:38242029-38851642	Weak transcription Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	nsv558573	chr12:38242029-38851642	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
24	nsv469356	chr12:38242029-39187408	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
25	nsv558574	chr12:38242029-39187408	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
26	esv3398964	chr12:38255337-38564698	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
27	nsv1036471	chr12:38279331-38843441	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
28	nsv469357	chr12:38347638-38865066	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	nsv558580	chr12:38347638-38865066	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
30	nsv558581	chr12:38373092-38865066	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	nsv1037285	chr12:38377445-38832352	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	nsv1047616	chr12:38377445-38843441	Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
33	nsv1048454	chr12:38377445-38868369	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
34	nsv1049142	chr12:38377445-38872038	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
35	nsv1053589	chr12:38377445-38875511	ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
36	nsv1041670	chr12:38381206-38860567	Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
37	esv2751097	chr12:38385512-38843441	Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
38	nsv899004	chr12:38424982-38730455	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
39	nsv1046762	chr12:38424982-38807781	Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
40	nsv826332	chr12:38442547-38958438	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
41	nsv1049289	chr12:38453409-38861645	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
42	nsv541472	chr12:38453409-38861645	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
43	nsv1054889	chr12:38453609-38861506	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
44	nsv541473	chr12:38453609-38861506	ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
45	nsv1044107	chr12:38453609-38873485	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
46	nsv541474	chr12:38453609-38873485	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
47	nsv1046439	chr12:38453609-38956518	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
48	nsv541475	chr12:38453609-38956518	Enhancers Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
49	nsv1039179	chr12:38453609-39029275	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
50	nsv541476	chr12:38453609-39029275	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:38530600-38533000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:38531600-38532600	Active TSS	Gastric	stomach
3	chr12:38531600-38533000	Active TSS	Thymus	Thymus
4	chr12:38531800-38532400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr12:38531800-38532400	Enhancers	Spleen	Spleen
6	chr12:38531800-38532600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:38531800-38532600	Flanking Active TSS	Pancreas	Pancrea
8	chr12:38531800-38533000	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr12:38531800-38533200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr12:38531800-38533200	Active TSS	HMEC	breast
11	chr12:38532000-38532400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr12:38532000-38532400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:38532000-38532400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
14	chr12:38532000-38532400	Flanking Active TSS	Brain Germinal Matrix	brain
15	chr12:38532000-38532400	Bivalent/Poised TSS	Stomach Mucosa	stomach
16	chr12:38532000-38532600	Enhancers	Primary B cells from peripheral blood	blood
17	chr12:38532000-38532600	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr12:38532000-38532600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:38532000-38532600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:38532000-38532600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
21	chr12:38532000-38533000	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr12:38532000-38533000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:38532000-38533000	Flanking Active TSS	Liver	Liver
24	chr12:38532000-38533000	Active TSS	Brain Angular Gyrus	brain
25	chr12:38532000-38533000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr12:38532000-38533000	Active TSS	HSMM	muscle
27	chr12:38532000-38533000	Active TSS	HSMMtube	muscle
28	chr12:38532000-38533000	Active TSS	Osteobl	bone
29	chr12:38532000-38533200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:38532000-38533200	Active TSS	A549	lung
31	chr12:38532200-38532400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
32	chr12:38532200-38532400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr12:38532200-38532400	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
34	chr12:38532200-38532400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr12:38532200-38532400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr12:38532200-38532400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr12:38532200-38532400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr12:38532200-38532400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr12:38532200-38532400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr12:38532200-38532400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr12:38532200-38532400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
42	chr12:38532200-38532400	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
43	chr12:38532200-38532400	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr12:38532200-38532400	Bivalent Enhancer	Brain Substantia Nigra	brain
45	chr12:38532200-38532400	Flanking Active TSS	Colonic Mucosa	Colon
46	chr12:38532200-38532400	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr12:38532200-38532400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
48	chr12:38532200-38532400	Flanking Active TSS	Fetal Brain Male	brain
49	chr12:38532200-38532400	Bivalent Enhancer	Fetal Muscle Leg	muscle
50	chr12:38532200-38532400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach

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