Variant report

Variant	rs74086758
Chromosome Location	chr14:104393524-104393525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104391863..104393842-chr14:104396870..104399828,2	K562	blood:
2	chr14:104387638..104390416-chr14:104390451..104394175,4	K562	blood:

Variant related genes	Relation type
ENSG00000156411	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12434277	1.00[EUR][1000 genomes]
rs17095276	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17095279	0.82[AMR][1000 genomes]
rs17101928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101937	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17101941	0.87[AMR][1000 genomes]
rs17101944	0.87[AMR][1000 genomes]
rs17101950	0.82[AMR][1000 genomes]
rs17101951	0.82[AMR][1000 genomes]
rs17101952	0.82[AMR][1000 genomes]
rs17101953	0.82[AMR][1000 genomes]
rs17101955	0.82[AMR][1000 genomes]
rs17101959	0.82[AMR][1000 genomes]
rs2273609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2295661	0.82[AMR][1000 genomes]
rs28384386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28576742	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3783311	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45523439	0.82[AMR][1000 genomes]
rs57686592	0.81[AFR][1000 genomes]
rs58073768	0.81[AFR][1000 genomes]
rs59439840	0.90[AFR][1000 genomes]
rs60014570	0.90[AFR][1000 genomes]
rs7140812	0.96[EUR][1000 genomes]
rs74086476	0.81[AFR][1000 genomes]
rs74086478	0.90[AFR][1000 genomes]
rs74086745	0.90[AFR][1000 genomes]
rs74086746	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74086749	0.90[AFR][1000 genomes]
rs74086750	0.81[AFR][1000 genomes]
rs74086754	0.81[AFR][1000 genomes]
rs74086755	0.81[AFR][1000 genomes]
rs74089152	0.81[AFR][1000 genomes]
rs74089176	0.81[AFR][1000 genomes]
rs8014519	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
7	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv902323	chr14:104381687-104464809	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104388200-104393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:104390200-104395400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr14:104392200-104395200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr14:104392400-104395600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links