Variant report

Variant	rs59439840
Chromosome Location	chr14:104391445-104391446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104375830..104378019-chr14:104390962..104392479,2	MCF-7	breast:
2	chr14:104387848..104389636-chr14:104390451..104392689,2	K562	blood:
3	chr14:104094616..104096793-chr14:104389564..104391467,2	K562	blood:
4	chr14:104387638..104390416-chr14:104390451..104394175,4	K562	blood:
5	chr14:104391025..104393220-chr14:104438159..104440643,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126214	Chromatin interaction
ENSG00000156411	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55797395	0.81[AFR][1000 genomes]
rs56209256	0.81[AFR][1000 genomes]
rs56253620	0.81[AFR][1000 genomes]
rs57686592	0.90[AFR][1000 genomes]
rs58073768	0.90[AFR][1000 genomes]
rs58442831	0.81[AFR][1000 genomes]
rs60014570	1.00[AFR][1000 genomes]
rs74086476	0.90[AFR][1000 genomes]
rs74086478	1.00[AFR][1000 genomes]
rs74086745	1.00[AFR][1000 genomes]
rs74086746	1.00[AFR][1000 genomes]
rs74086749	1.00[AFR][1000 genomes]
rs74086750	0.90[AFR][1000 genomes]
rs74086754	0.90[AFR][1000 genomes]
rs74086755	0.90[AFR][1000 genomes]
rs74086758	0.90[AFR][1000 genomes]
rs74086769	0.81[AFR][1000 genomes]
rs74086775	0.81[AFR][1000 genomes]
rs74086785	0.81[AFR][1000 genomes]
rs74086982	0.81[AFR][1000 genomes]
rs74089139	0.81[AFR][1000 genomes]
rs74089152	0.90[AFR][1000 genomes]
rs74089176	0.90[AFR][1000 genomes]
rs74089537	0.81[AFR][1000 genomes]
rs74089539	0.81[AFR][1000 genomes]
rs74089546	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
7	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv902323	chr14:104381687-104464809	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104388200-104392000	Enhancers	Primary hematopoietic stem cells	blood
2	chr14:104388200-104393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:104388400-104391600	Weak transcription	HepG2	liver
4	chr14:104388400-104392200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:104390200-104395400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr14:104390600-104391600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr14:104390800-104391800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:104390800-104392600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:104390800-104392800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:104391200-104392600	Enhancers	Primary monocytes fromperipheralblood	blood

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