Variant report

Variant	rs74089539
Chromosome Location	chr14:104426831-104426832
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104408709..104411499-chr14:104426104..104427639,2	MCF-7	breast:
2	chr14:104386060..104387762-chr14:104425498..104427108,2	MCF-7	breast:
3	chr14:104367293..104369155-chr14:104426158..104428921,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55797395	1.00[AFR][1000 genomes]
rs56253620	1.00[AFR][1000 genomes]
rs57686592	0.91[AFR][1000 genomes]
rs59439840	0.81[AFR][1000 genomes]
rs60014570	0.81[AFR][1000 genomes]
rs74086478	0.81[AFR][1000 genomes]
rs74086745	0.81[AFR][1000 genomes]
rs74086746	0.81[AFR][1000 genomes]
rs74086749	0.81[AFR][1000 genomes]
rs74086766	0.84[AFR][1000 genomes]
rs74086769	1.00[AFR][1000 genomes]
rs74086775	1.00[AFR][1000 genomes]
rs74086779	0.84[AFR][1000 genomes]
rs74086785	1.00[AFR][1000 genomes]
rs74086982	1.00[AFR][1000 genomes]
rs74089139	1.00[AFR][1000 genomes]
rs74089152	0.91[AFR][1000 genomes]
rs74089176	0.91[AFR][1000 genomes]
rs74089537	1.00[AFR][1000 genomes]
rs74089542	0.84[AFR][1000 genomes]
rs74089546	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
5	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv902323	chr14:104381687-104464809	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv902324	chr14:104399640-104464809	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1049690	chr14:104411621-104575838	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv542208	chr14:104411621-104575838	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104416000-104431000	Weak transcription	Hela-S3	cervix
2	chr14:104417600-104447800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr14:104423200-104445600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr14:104424800-104427000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:104425600-104436400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr14:104426600-104427200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:104426600-104427200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:104426600-104427200	Enhancers	Fetal Kidney	kidney
9	chr14:104426800-104427400	Enhancers	Fetal Stomach	stomach

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