Variant report

Variant	rs74090434
Chromosome Location	chr1:77741619-77741620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56099019	1.00[AMR][1000 genomes]
rs57002064	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58413428	1.00[AMR][1000 genomes]
rs58537083	1.00[AMR][1000 genomes]
rs59621284	1.00[AMR][1000 genomes]
rs60276611	1.00[AMR][1000 genomes]
rs60353910	1.00[AMR][1000 genomes]
rs6700151	1.00[AMR][1000 genomes]
rs74090412	1.00[AMR][1000 genomes]
rs74090413	1.00[AMR][1000 genomes]
rs74090415	1.00[AMR][1000 genomes]
rs74090455	1.00[AMR][1000 genomes]
rs74090458	1.00[AMR][1000 genomes]
rs74090463	1.00[AMR][1000 genomes]
rs74090465	1.00[AMR][1000 genomes]
rs74090474	1.00[AMR][1000 genomes]
rs74090475	1.00[AMR][1000 genomes]
rs74090476	1.00[AMR][1000 genomes]
rs74090479	1.00[AMR][1000 genomes]
rs74090490	1.00[AMR][1000 genomes]
rs74090495	1.00[AMR][1000 genomes]
rs74092424	1.00[AMR][1000 genomes]
rs74092439	1.00[AMR][1000 genomes]
rs74092446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77737200-77747400	Weak transcription	Aorta	Aorta
2	chr1:77738400-77746600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:77740200-77746800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:77740600-77742800	Weak transcription	NHDF-Ad	bronchial
5	chr1:77741600-77744000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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