Variant report

Variant	rs74090490
Chromosome Location	chr1:77835420-77835421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56099019	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57002064	1.00[AMR][1000 genomes]
rs58413428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59621284	1.00[AMR][1000 genomes]
rs60276611	1.00[AMR][1000 genomes]
rs6700151	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090412	1.00[AMR][1000 genomes]
rs74090413	1.00[AMR][1000 genomes]
rs74090415	1.00[AMR][1000 genomes]
rs74090434	1.00[AMR][1000 genomes]
rs74090455	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090458	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090463	1.00[AMR][1000 genomes]
rs74090465	1.00[AMR][1000 genomes]
rs74090474	1.00[AMR][1000 genomes]
rs74090475	1.00[AMR][1000 genomes]
rs74090476	1.00[AMR][1000 genomes]
rs74090479	1.00[AMR][1000 genomes]
rs74090495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090498	1.00[AFR][1000 genomes]
rs74092439	1.00[AMR][1000 genomes]
rs74092446	1.00[AMR][1000 genomes]
rs74092605	0.92[AFR][1000 genomes]
rs74092606	0.92[AFR][1000 genomes]
rs74092608	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv2764210	chr1:77825478-77838400	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77795000-77836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:77803400-77839200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:77814400-77835600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:77819800-77835600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:77820400-77836400	Weak transcription	Primary T cells from cord blood	blood
6	chr1:77821000-77835600	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:77824400-77836400	Weak transcription	Brain Anterior Caudate	brain
8	chr1:77826200-77836400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:77831600-77835600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr1:77831600-77835800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:77833200-77835800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr1:77834000-77839800	Enhancers	NHDF-Ad	bronchial
13	chr1:77834200-77835600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:77834200-77835600	Enhancers	HSMM	muscle
15	chr1:77834200-77836400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:77834200-77836600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:77834200-77839000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:77834600-77835600	Weak transcription	Brain Substantia Nigra	brain
19	chr1:77834600-77835800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr1:77835000-77835600	Enhancers	Osteobl	bone
21	chr1:77835200-77837200	Enhancers	Brain Cingulate Gyrus	brain
22	chr1:77835200-77838000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:77835400-77835600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:77835400-77835800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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