Variant report

Variant	rs74101925
Chromosome Location	chr1:95428611-95428612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:95416169..95418622-chr1:95427478..95429036,2	K562	blood:
2	chr1:95428163..95430092-chr1:95432273..95433856,2	K562	blood:
3	chr1:95417122..95419452-chr1:95427536..95429071,2	K562	blood:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC44A3-1	chr1:95428535-95429158	XLOC_000304
2	lnc-SLC44A3-1	chr1:95428535-95428826	XLOC_000304
3	lnc-SLC44A3-1	chr1:95428535-95428726	XLOC_000304
4	lnc-SLC44A3-1	chr1:95428481-95428825	XLOC_000304
5	lnc-SLC44A3-1	chr1:95428535-95428826	XLOC_000304
6	lnc-SLC44A3-1	chr1:95428535-95429158	XLOC_000304
7	lnc-SLC44A3-1	chr1:95428535-95429158	XLOC_000304
8	lnc-SLC44A3-1	chr1:95428481-95428826	ENSG00000235501.1
9	lnc-SLC44A3-1	chr1:95428535-95428818	NONHSAT004634
10	lnc-SLC44A3-1	chr1:95428481-95428818	NONHSAT004635
11	lnc-SLC44A3-1	chr1:95428481-95428783	NONHSAT004637
12	lnc-SLC44A3-1	chr1:95428535-95428783	NONHSAT004636
13	lnc-SLC44A3-1	chr1:95428481-95428825	NONHSAT004632
14	lnc-SLC44A3-1	chr1:95428481-95428825	NONHSAT004631

No data

rs_ID	r²[population]
rs11809155	0.84[AFR][1000 genomes]
rs9432412	0.84[AFR][1000 genomes]

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95421600-95429200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:95421600-95429600	Weak transcription	Spleen	Spleen
3	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:95427000-95429200	Enhancers	Fetal Intestine Small	intestine
5	chr1:95427600-95428800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:95427600-95429000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr1:95427600-95429200	Enhancers	Fetal Intestine Large	intestine
8	chr1:95427800-95429000	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr1:95428000-95428800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr1:95428000-95429000	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr1:95428000-95429000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr1:95428000-95429000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr1:95428000-95429000	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr1:95428000-95429000	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr1:95428000-95429000	Flanking Active TSS	HUVEC	blood vessel
16	chr1:95428000-95429200	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr1:95428000-95429200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:95428000-95429200	Active TSS	Right Atrium	heart
19	chr1:95428200-95428800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:95428200-95428800	Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr1:95428200-95428800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:95428200-95428800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:95428200-95428800	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr1:95428200-95428800	Active TSS	Colon Smooth Muscle	Colon
25	chr1:95428200-95428800	Enhancers	Fetal Heart	heart
26	chr1:95428200-95428800	Flanking Active TSS	Placenta	Placenta
27	chr1:95428200-95428800	Active TSS	Right Ventricle	heart
28	chr1:95428200-95428800	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr1:95428200-95428800	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr1:95428200-95428800	Active TSS	Small Intestine	intestine
31	chr1:95428200-95428800	Active TSS	Stomach Mucosa	stomach
32	chr1:95428200-95428800	Flanking Active TSS	A549	lung
33	chr1:95428200-95428800	Active TSS	HSMM	muscle
34	chr1:95428200-95428800	Flanking Active TSS	HSMMtube	muscle
35	chr1:95428200-95428800	Active TSS	NHLF	lung
36	chr1:95428200-95429000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr1:95428200-95429000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr1:95428200-95429000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:95428200-95429000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr1:95428200-95429000	Active TSS	Brain Angular Gyrus	brain
41	chr1:95428200-95429000	Active TSS	Brain Anterior Caudate	brain
42	chr1:95428200-95429000	Active TSS	Brain Cingulate Gyrus	brain
43	chr1:95428200-95429000	Active TSS	Brain Hippocampus Middle	brain
44	chr1:95428200-95429000	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr1:95428200-95429000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:95428200-95429000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr1:95428200-95429000	Active TSS	Fetal Lung	lung
48	chr1:95428200-95429000	Flanking Active TSS	Fetal Muscle Leg	muscle
49	chr1:95428200-95429000	Active TSS	Psoas Muscle	Psoas
50	chr1:95428200-95429000	Active TSS	Skeletal Muscle Female	skeletal muscle

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