Variant report

Variant	rs9432412
Chromosome Location	chr1:95387792-95387793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95387353..95389524-chr1:95396691..95399201,2	K562	blood:
2	chr1:95387397..95388231-chr3:152456694..152457562,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11809155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34750325	1.00[ASN][1000 genomes]
rs74101911	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74101925	0.84[AFR][1000 genomes]
rs9432408	0.84[EUR][1000 genomes]
rs9432615	0.87[EUR][1000 genomes]
rs9432616	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947291	chr1:95382933-95393244	Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95357800-95390800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:95364000-95388600	Weak transcription	Fetal Brain Male	brain
3	chr1:95368400-95388400	Weak transcription	Fetal Intestine Large	intestine
4	chr1:95368400-95390600	Weak transcription	Fetal Thymus	thymus
5	chr1:95369000-95388200	Weak transcription	Fetal Brain Female	brain
6	chr1:95378600-95388600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:95383400-95388000	Genic enhancers	Fetal Muscle Leg	muscle
8	chr1:95383400-95388000	Enhancers	Ovary	ovary
9	chr1:95383400-95389400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:95384600-95388000	Enhancers	Adipose Nuclei	Adipose
11	chr1:95384600-95388400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:95384600-95389400	Genic enhancers	HepG2	liver
13	chr1:95384800-95388600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:95384800-95389400	Enhancers	Brain Substantia Nigra	brain
15	chr1:95385000-95388400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr1:95385200-95388600	Weak transcription	Fetal Intestine Small	intestine
17	chr1:95385400-95389400	Weak transcription	Colonic Mucosa	Colon
18	chr1:95385600-95388000	Weak transcription	Brain Germinal Matrix	brain
19	chr1:95385600-95388400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:95385600-95388600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:95385600-95388600	Weak transcription	Gastric	stomach
22	chr1:95385600-95389400	Weak transcription	Spleen	Spleen
23	chr1:95385600-95390600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:95385800-95387800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr1:95385800-95387800	Enhancers	Stomach Smooth Muscle	stomach
26	chr1:95386000-95388200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:95386000-95388200	Weak transcription	Placenta	Placenta
28	chr1:95386000-95388200	Weak transcription	Right Ventricle	heart
29	chr1:95386000-95388200	Genic enhancers	Osteobl	bone
30	chr1:95386000-95388400	Weak transcription	Fetal Kidney	kidney
31	chr1:95386000-95388400	Weak transcription	A549	lung
32	chr1:95386000-95389400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:95386000-95389400	Weak transcription	Esophagus	oesophagus
34	chr1:95386200-95388200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:95386200-95388200	Weak transcription	Fetal Lung	lung
36	chr1:95386200-95388400	Weak transcription	Fetal Stomach	stomach
37	chr1:95386200-95388600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:95386200-95388800	Weak transcription	Brain Angular Gyrus	brain
39	chr1:95386400-95388200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr1:95386400-95388200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:95386400-95388200	Weak transcription	NHEK	skin
42	chr1:95386400-95388400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr1:95386400-95388400	Weak transcription	Small Intestine	intestine
44	chr1:95386400-95390600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr1:95386600-95388000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr1:95386600-95388000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr1:95386600-95389600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:95386600-95391000	Transcr. at gene 5' and 3'	HSMM	muscle
49	chr1:95386800-95387800	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr1:95386800-95388200	Weak transcription	Brain Anterior Caudate	brain

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