The 2.0 version of rSNPBase

Variant report

Variant rs9432616
Chromosome Location chr1:95375395-95375396
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95329000-95385000 Weak transcription Colonic Mucosa Colon
2 chr1:95350400-95378200 Weak transcription Brain Angular Gyrus brain
3 chr1:95357800-95390800 Weak transcription Primary hematopoietic stem cells blood
4 chr1:95360400-95378400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr1:95361400-95379600 Weak transcription Esophagus oesophagus
6 chr1:95363600-95377200 Weak transcription Gastric stomach
7 chr1:95364000-95388600 Weak transcription Fetal Brain Male brain
8 chr1:95364800-95384800 Weak transcription Brain Inferior Temporal Lobe brain
9 chr1:95365600-95375400 Weak transcription Brain Germinal Matrix brain
10 chr1:95367800-95375600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:95367800-95376200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr1:95368400-95388400 Weak transcription Fetal Intestine Large intestine
13 chr1:95368400-95390600 Weak transcription Fetal Thymus thymus
14 chr1:95369000-95378400 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:95369000-95388200 Weak transcription Fetal Brain Female brain
16 chr1:95369200-95376200 Weak transcription Brain Substantia Nigra brain
17 chr1:95369200-95378000 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr1:95369600-95378000 Weak transcription Brain Anterior Caudate brain
19 chr1:95370400-95377800 Weak transcription Small Intestine intestine
20 chr1:95370800-95378000 Weak transcription Aorta Aorta
21 chr1:95371000-95377800 Weak transcription Adipose Nuclei Adipose
22 chr1:95371000-95379600 Weak transcription Pancreas Pancrea
23 chr1:95371400-95375400 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr1:95371400-95377200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:95371800-95376600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:95372600-95376200 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:95372600-95377800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:95372600-95378000 Weak transcription Spleen Spleen
29 chr1:95372800-95378000 Weak transcription NHDF-Ad bronchial
30 chr1:95372800-95385000 Weak transcription Fetal Kidney kidney
31 chr1:95373000-95376600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:95373600-95375400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:95373600-95377000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr1:95373800-95375800 Strong transcription HepG2 liver
35 chr1:95373800-95382400 Genic enhancers Fetal Muscle Leg muscle
36 chr1:95374000-95375400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:95374000-95377200 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:95374000-95378000 Strong transcription Osteobl bone
39 chr1:95374000-95381200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:95374000-95384600 Weak transcription Fetal Intestine Small intestine
41 chr1:95374200-95375600 Weak transcription Duodenum Mucosa Duodenum
42 chr1:95374200-95376200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:95374400-95377200 Enhancers H9 Cell Line embryonic stem cell
44 chr1:95374600-95376200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
45 chr1:95374600-95377200 Enhancers iPS-18 Cell Line embryonic stem cell
46 chr1:95374600-95381200 Weak transcription Fetal Stomach stomach
47 chr1:95374800-95375400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr1:95374800-95375400 Enhancers iPS-15b Cell Line embryonic stem cell
49 chr1:95374800-95375400 Genic enhancers Fetal Lung lung
50 chr1:95374800-95375800 Strong transcription A549 lung

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Last update: Aug 31, 2015