Variant report

Variant	rs9432408
Chromosome Location	chr1:95374979-95374980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11809155	0.84[EUR][1000 genomes]
rs2228344	0.87[EUR][1000 genomes]
rs3860360	0.87[EUR][1000 genomes]
rs6661181	0.89[EUR][1000 genomes]
rs74101911	0.84[EUR][1000 genomes]
rs9432404	0.89[EUR][1000 genomes]
rs9432407	0.89[EUR][1000 genomes]
rs9432412	0.84[EUR][1000 genomes]
rs9432612	0.84[EUR][1000 genomes]
rs9432615	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9432616	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95350400-95378200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:95355000-95375200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:95356200-95375000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:95357800-95390800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:95360200-95375000	Weak transcription	Psoas Muscle	Psoas
7	chr1:95360400-95378400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:95361400-95379600	Weak transcription	Esophagus	oesophagus
9	chr1:95363600-95377200	Weak transcription	Gastric	stomach
10	chr1:95364000-95388600	Weak transcription	Fetal Brain Male	brain
11	chr1:95364400-95375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:95364800-95384800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:95365600-95375400	Weak transcription	Brain Germinal Matrix	brain
14	chr1:95367800-95375600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:95367800-95376200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:95368400-95388400	Weak transcription	Fetal Intestine Large	intestine
17	chr1:95368400-95390600	Weak transcription	Fetal Thymus	thymus
18	chr1:95369000-95378400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:95369000-95388200	Weak transcription	Fetal Brain Female	brain
20	chr1:95369200-95376200	Weak transcription	Brain Substantia Nigra	brain
21	chr1:95369200-95378000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:95369400-95375200	Weak transcription	Brain Hippocampus Middle	brain
23	chr1:95369600-95375000	Weak transcription	Fetal Heart	heart
24	chr1:95369600-95378000	Weak transcription	Brain Anterior Caudate	brain
25	chr1:95370400-95377800	Weak transcription	Small Intestine	intestine
26	chr1:95370800-95375000	Weak transcription	Right Ventricle	heart
27	chr1:95370800-95375000	Weak transcription	HMEC	breast
28	chr1:95370800-95378000	Weak transcription	Aorta	Aorta
29	chr1:95371000-95375000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:95371000-95375200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:95371000-95377800	Weak transcription	Adipose Nuclei	Adipose
32	chr1:95371000-95379600	Weak transcription	Pancreas	Pancrea
33	chr1:95371200-95375200	Weak transcription	Right Atrium	heart
34	chr1:95371400-95375400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr1:95371400-95377200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:95371800-95376600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:95372200-95375000	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr1:95372200-95375000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:95372200-95375000	Genic enhancers	NHLF	lung
40	chr1:95372400-95375000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr1:95372400-95375200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr1:95372600-95376200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:95372600-95377800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:95372600-95378000	Weak transcription	Spleen	Spleen
45	chr1:95372800-95375000	Weak transcription	Ovary	ovary
46	chr1:95372800-95378000	Weak transcription	NHDF-Ad	bronchial
47	chr1:95372800-95385000	Weak transcription	Fetal Kidney	kidney
48	chr1:95373000-95375000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:95373000-95376600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:95373600-95375000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell

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