Variant report

Variant	rs9432407
Chromosome Location	chr1:95370763-95370764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:95370746-95370905	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr1:95370214-95370959	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
CNN3	TF binding region

rs_ID	r²[population]
rs2228344	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3860360	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6661181	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9432404	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9432408	0.89[EUR][1000 genomes]
rs9432612	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9432615	0.87[EUR][1000 genomes]
rs9432616	0.87[EUR][1000 genomes]

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95350400-95378200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:95353400-95373600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:95353800-95373600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:95355000-95375200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:95355200-95373000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:95356000-95370800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr1:95356200-95375000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:95356800-95371400	Strong transcription	Liver	Liver
10	chr1:95357800-95390800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:95360200-95373800	Weak transcription	Fetal Intestine Small	intestine
12	chr1:95360200-95375000	Weak transcription	Psoas Muscle	Psoas
13	chr1:95360400-95378400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:95360800-95371200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:95360800-95373600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:95361000-95370800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:95361000-95371000	Strong transcription	HepG2	liver
18	chr1:95361400-95379600	Weak transcription	Esophagus	oesophagus
19	chr1:95363400-95372400	Genic enhancers	HSMM	muscle
20	chr1:95363600-95377200	Weak transcription	Gastric	stomach
21	chr1:95363800-95373000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:95364000-95371200	Genic enhancers	HSMMtube	muscle
23	chr1:95364000-95388600	Weak transcription	Fetal Brain Male	brain
24	chr1:95364400-95375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:95364800-95384800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:95365000-95371000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr1:95365600-95375400	Weak transcription	Brain Germinal Matrix	brain
28	chr1:95367200-95371400	Genic enhancers	NH-A	brain
29	chr1:95367800-95371000	Genic enhancers	Muscle Satellite Cultured Cells	--
30	chr1:95367800-95371400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:95367800-95375600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:95367800-95376200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr1:95368200-95372400	Weak transcription	Fetal Kidney	kidney
34	chr1:95368400-95388400	Weak transcription	Fetal Intestine Large	intestine
35	chr1:95368400-95390600	Weak transcription	Fetal Thymus	thymus
36	chr1:95368600-95370800	Enhancers	Ovary	ovary
37	chr1:95368600-95371200	Enhancers	Colon Smooth Muscle	Colon
38	chr1:95368800-95370800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr1:95368800-95371000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:95368800-95371400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
41	chr1:95368800-95373600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr1:95368800-95374000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr1:95369000-95371000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr1:95369000-95371400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:95369000-95372600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr1:95369000-95378400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr1:95369000-95388200	Weak transcription	Fetal Brain Female	brain
48	chr1:95369200-95370800	Enhancers	HMEC	breast
49	chr1:95369200-95371200	Genic enhancers	HUVEC	blood vessel
50	chr1:95369200-95371200	Genic enhancers	NHLF	lung

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