Variant report

Variant	rs74107809
Chromosome Location	chr13:95648619-95648620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11568662	1.00[AMR][1000 genomes]
rs74105420	1.00[AMR][1000 genomes]
rs74107814	1.00[AMR][1000 genomes]
rs74107818	1.00[AMR][1000 genomes]
rs74107819	1.00[AMR][1000 genomes]
rs9590144	1.00[AMR][1000 genomes]
rs9590156	1.00[AMR][1000 genomes]
rs9590161	1.00[AMR][1000 genomes]
rs9590163	1.00[AMR][1000 genomes]
rs9805226	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95645400-95650600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:95646600-95654400	Weak transcription	Osteobl	bone
3	chr13:95648200-95649400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:95648400-95648800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:95648400-95648800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:95648400-95649000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:95648400-95649000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:95648400-95649000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:95648400-95649200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr13:95648400-95649200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:95648400-95649400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:95648400-95649400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:95648400-95650800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr13:95648400-95650800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr13:95648400-95650800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr13:95648400-95651000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr13:95648600-95649200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:95648600-95649200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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