Variant report

Variant	rs74107818
Chromosome Location	chr13:95669943-95669944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:95669326-95670387	K562	blood:	n/a	n/a

Variant related genes	Relation type
RNU6-62P	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11568662	1.00[AMR][1000 genomes]
rs73561745	1.00[AMR][1000 genomes]
rs74105420	1.00[AMR][1000 genomes]
rs74107809	1.00[AMR][1000 genomes]
rs74107814	1.00[AMR][1000 genomes]
rs74107819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9524766	0.84[AFR][1000 genomes]
rs9590144	1.00[AMR][1000 genomes]
rs9590156	1.00[AMR][1000 genomes]
rs9590161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9590163	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9805226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95661400-95694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:95666800-95681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:95668000-95671200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:95668600-95712000	Weak transcription	NHDF-Ad	bronchial
6	chr13:95669000-95680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:95669000-95686400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:95669200-95671600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr13:95669200-95672200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr13:95669200-95672200	Weak transcription	A549	lung
11	chr13:95669400-95671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:95669400-95672200	Weak transcription	K562	blood
13	chr13:95669400-95672600	Weak transcription	Primary T cells from cord blood	blood
14	chr13:95669400-95672600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr13:95669400-95686000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:95669400-95690800	Weak transcription	Ovary	ovary
17	chr13:95669400-95723200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:95669600-95672600	Weak transcription	GM12878-XiMat	blood
19	chr13:95669600-95686200	Weak transcription	NHLF	lung
20	chr13:95669600-95692000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links