Variant report

Variant	rs74108883
Chromosome Location	chr13:94489244-94489245
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10492636	0.84[AFR][1000 genomes]
rs12427803	0.84[AFR][1000 genomes]
rs12429856	0.84[AFR][1000 genomes]
rs17174721	0.84[AFR][1000 genomes]
rs17174735	0.84[AFR][1000 genomes]
rs17253241	0.84[AFR][1000 genomes]
rs2892668	0.84[AFR][1000 genomes]
rs56118807	0.84[AFR][1000 genomes]
rs56970055	0.84[AFR][1000 genomes]
rs57002007	0.84[AFR][1000 genomes]
rs57433205	0.84[AFR][1000 genomes]
rs57800923	0.84[AFR][1000 genomes]
rs58794076	0.84[AFR][1000 genomes]
rs59292552	1.00[AMR][1000 genomes]
rs60726331	1.00[AMR][1000 genomes]
rs61462500	0.84[AFR][1000 genomes]
rs74108858	0.89[AFR][1000 genomes]
rs74108860	0.84[AFR][1000 genomes]
rs74108861	0.89[AFR][1000 genomes]
rs74108875	0.84[AFR][1000 genomes]
rs74108888	0.84[AFR][1000 genomes]
rs74108889	0.84[AFR][1000 genomes]
rs74108896	0.84[AFR][1000 genomes]
rs74108897	0.84[AFR][1000 genomes]
rs74108898	0.84[AFR][1000 genomes]
rs74109161	1.00[AMR][1000 genomes]
rs74109179	1.00[AMR][1000 genomes]
rs74110903	0.82[AFR][1000 genomes]
rs74111005	0.84[AFR][1000 genomes]
rs74111008	0.84[AFR][1000 genomes]
rs74111010	0.84[AFR][1000 genomes]
rs74111033	0.84[AFR][1000 genomes]
rs74111035	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv934193	chr13:94462018-94493268	Weak transcription Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94479200-94495400	Weak transcription	Ovary	ovary
2	chr13:94483600-94495800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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