Variant report

Variant	rs74110903
Chromosome Location	chr13:94430587-94430588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10492638	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12427786	0.82[ASN][1000 genomes]
rs12427803	0.82[ASN][1000 genomes]
rs12428209	0.82[ASN][1000 genomes]
rs12428875	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12429608	0.82[ASN][1000 genomes]
rs12429856	0.82[ASN][1000 genomes]
rs17174721	0.82[ASN][1000 genomes]
rs17174735	0.82[ASN][1000 genomes]
rs17253234	0.82[ASN][1000 genomes]
rs17253241	0.82[ASN][1000 genomes]
rs17253255	0.82[ASN][1000 genomes]
rs17253262	0.82[ASN][1000 genomes]
rs17253269	0.82[ASN][1000 genomes]
rs2389052	0.83[ASN][1000 genomes]
rs2892668	0.83[ASN][1000 genomes]
rs56003695	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56118807	0.82[ASN][1000 genomes]
rs56396732	0.82[ASN][1000 genomes]
rs56970055	0.82[ASN][1000 genomes]
rs57002007	0.82[ASN][1000 genomes]
rs57310418	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57433205	0.82[ASN][1000 genomes]
rs57605778	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs57800923	0.82[ASN][1000 genomes]
rs58232472	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59283174	0.82[ASN][1000 genomes]
rs60257121	0.82[ASN][1000 genomes]
rs60393268	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60726331	0.83[AFR][1000 genomes]
rs61462500	0.82[ASN][1000 genomes]
rs61506126	0.82[ASN][1000 genomes]
rs74108858	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs74108860	0.83[ASN][1000 genomes]
rs74108861	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs74108875	0.83[ASN][1000 genomes]
rs74108883	0.82[AFR][1000 genomes]
rs74108888	0.82[ASN][1000 genomes]
rs74108889	0.82[ASN][1000 genomes]
rs74108892	0.82[ASN][1000 genomes]
rs74108894	0.82[ASN][1000 genomes]
rs74108896	0.82[ASN][1000 genomes]
rs74108897	0.82[ASN][1000 genomes]
rs74108898	0.82[ASN][1000 genomes]
rs74108901	0.82[ASN][1000 genomes]
rs74108902	0.82[ASN][1000 genomes]
rs74110907	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74111004	0.82[ASN][1000 genomes]
rs74111005	0.82[ASN][1000 genomes]
rs74111006	0.82[ASN][1000 genomes]
rs74111008	0.82[ASN][1000 genomes]
rs74111010	0.82[ASN][1000 genomes]
rs74111011	0.82[ASN][1000 genomes]
rs74111015	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1130	chr13:94410849-94455628	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94427400-94430600	Enhancers	HepG2	liver
2	chr13:94428200-94430800	Weak transcription	HSMMtube	muscle
3	chr13:94429000-94431200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:94429600-94430600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:94429600-94430600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr13:94429600-94430600	Weak transcription	Ovary	ovary
7	chr13:94429800-94430800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:94429800-94430800	Weak transcription	Aorta	Aorta
9	chr13:94430000-94431200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:94430200-94430800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:94430200-94430800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:94430200-94431200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:94430400-94430600	Enhancers	HUES64 Cell Line	embryonic stem cell

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